Marta Kasprzak - List of publications in chronological order


Articles:

1-15. Articles from the years 1995-2000.
16-39. Articles from the years 2001-2005.
40-51. Articles from the years 2006-2010.
  1. J. Blazewicz, E.K. Burke, M. Kasprzak, A. Kovalev, M.Y. Kovalyov, "The simplified partial digest problem: approximation and a graph-theoretic model", European Journal of Operational Research 208 (2011) 142-152. Abstract or Download full text — The final publication is available at Elsevier via http://dx.doi.org/10.1016/j.ejor.2010.07.027
  2. J. Blazewicz, M. Figlerowicz, M. Kasprzak, M. Nowacka, A. Rybarczyk, "RNA Partial Degradation Problem: motivation, complexity, algorithm", Journal of Computational Biology 18 (2011) 821-834. Abstract or Download full text — The final publication is available at Mary Ann Liebert, Inc. via http://online.liebertpub.com/doi/abs/10.1089/cmb.2010.0153
  3. J. Blazewicz, B. Bosak, P. Gawron, M. Kasprzak, K. Kurowski, T. Piontek, A. Swiercz, "Highly efficient parallel approach to the next-generation DNA sequencing", Lecture Notes in Computer Science 7204 (2012) 262-271. Abstract or Download full text — The final publication is available at Springer via http://dx.doi.org/10.1007/978-3-642-31500-8_27
  4. J. Blazewicz, M. Kasprzak, "Reduced-by-matching graphs: toward simplifying Hamiltonian circuit problem", Fundamenta Informaticae 118 (2012) 225-244. Abstract or Download full text — The final publication is available at IOS Press via http://dx.doi.org/10.3233/FI-2012-711
  5. J. Blazewicz, M. Kasprzak, "Complexity issues in computational biology", Fundamenta Informaticae 118 (2012) 385-401. Abstract or Download full text — The final publication is available at IOS Press via http://dx.doi.org/10.3233/FI-2012-721
  6. J. Blazewicz, W. Frohmberg, P. Gawron, M. Kasprzak, M. Kierzynka, A. Swiercz, P. Wojciechowski, "DNA sequence assembly involving an acyclic graph model", Foundations of Computing and Decision Sciences 38 (2013) 25-34. Abstract or Download full text
  7. D. Santoni, A. Swiercz, A. Zmienko, M. Kasprzak, M. Blazewicz, P. Bertolazzi, G. Felici, "An integrated approach (CLuster Analysis Integration Method) to combine expression data and protein-protein interaction networks in agrigenomics: application on Arabidopsis thaliana", OMICS: A Journal of Integrative Biology 18 (2014) 155-165. Abstract or Download full text — The final publication is available at Mary Ann Liebert, Inc. via http://online.liebertpub.com/doi/abs/10.1089/omi.2013.0050
  8. A. Swiercz, B. Bosak, M. Chlopkowski, A. Hoffa, M. Kasprzak, K. Kurowski, T. Piontek, J. Blazewicz, "Preprocessing and storing high-throughput sequencing data", Computational Methods in Science and Technology 20 (2014) 9-20. Abstract or Download full text
  9. M. Chlopkowski, M. Antczak, M. Slusarczyk, A. Wdowinski, M. Zajaczkowski, M. Kasprzak, "High-order statistical compressor for long-term storage of DNA sequencing data", RAIRO Operations Research 50 (2016) 351-361. Abstract or Download full text — The original publication is available at www.rairo-ro.org, with EDP Sciences as the copyright owner, via http://www.rairo-ro.org/articles/ro/abs/2016/02/ro150039-s/ro150039-s.html
  10. M. Antczak, M. Kasprzak, P. Lukasiak, J. Blazewicz, "Structural alignment of protein descriptors − a combinatorial model", BMC Bioinformatics 17:383 (2016). Download full text
  11. A. Rybarczyk, A. Hertz, M. Kasprzak, J. Blazewicz, "Tabu search for the RNA partial degradation problem", International Journal of Applied Mathematics and Computer Science 27 (2017) 401-415. Download full text
  12. J. Blazewicz, M. Kasprzak, M. Kierzynka, W. Frohmberg, A. Swiercz, P. Wojciechowski, P. Zurkowski, "Graph algorithms for DNA sequencing - origins, current models and the future", European Journal of Operational Research 264 (2018) 799-812. Abstract or Download full text — The final publication is available at Elsevier via https://doi.org/10.1016/j.ejor.2016.06.043

Monographs and chapters:

1. Monographs/chapters from the years 1995-2000.
2-3. Monographs/chapters from the years 2001-2005.
  1. M. Kasprzak, Wybrane algorytmy i modele grafowe w bioinformatyce, Poznan: Wydawnictwo Politechniki Poznanskiej, 2013.
  2. J. Blazewicz, M. Kasprzak, N. Vlassis, "Ties between Graph Theory and Biology", section 13.2 in Handbook of Graph Theory (second edition), J.L. Gross, J. Yellen, P. Zhang (eds.), Chapman and Hall/CRC, 2013.

Scientific reports:

1-11. Reports from the years 1995-2000.
12-16. Reports from the years 2001-2005.

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13 Oct 2017