Uses of Package
pl.poznan.put.pdb.analysis
Packages that use pl.poznan.put.pdb.analysis
Package
Description
Contains classes responsible for PDB/mmCIF data modelling and analysis.
Contains classes which work on data from PDB or mmCIF files.
Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
Contains classes dealing with torsion angles handling.
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Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.pdb
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Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.pdb.analysisClassDescriptionA structure which detects residues from atoms alone and then chains from residues.A container of one or more PDB files converted from a single mmCIF file.A structure parsed from an mmCIF file.A default implementation of a structure parsed from an mmCIF file.A default implementation of a structure parsed from a PDB file.A default implementation of a residue (nucleotide or amino acid).A container for a list of residues.Immutable implementation of
CifContainer.Builds instances of typeImmutableCifContainer.Immutable implementation ofDefaultCifModel.Builds instances of typeImmutableDefaultCifModel.Immutable implementation ofDefaultPdbModel.Builds instances of typeImmutableDefaultPdbModel.Immutable implementation ofDefaultPdbResidue.Builds instances of typeImmutableDefaultPdbResidue.Immutable implementation ofDefaultResidueCollection.Builds instances of typeImmutableDefaultResidueCollection.Immutable implementation ofPdbChain.Builds instances of typeImmutablePdbChain.Immutable implementation ofPdbCompactFragment.Builds instances of typeImmutablePdbCompactFragment.Immutable implementation ofResidueTorsionAngles.Builds instances of typeImmutableResidueTorsionAngles.A set of PDB files which all correspond to the same structure and also their chain names' mapping.A type of molecule (RNA or protein).A chain in a structure.A collection of residues such that (i, i+1) are connected.A structure parsed from a PDB file.A residue (nucleotide or amino acid).A collection of residues.A builder that can merge many residue collections in one mmCIF file.A builder that can merge many residue collections in one PDB file.A fragment of a residue with a set of expected atoms and a set of possible other atoms.A provider of detailed information about a residue (its type, expected atoms, torsion angles etc).A collection of torsion angles values for a single residue.A collection of residues with a common molecule type (RNA or protein). -
Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.proteinClassDescriptionA type of molecule (RNA or protein).A fragment of a residue with a set of expected atoms and a set of possible other atoms.A provider of detailed information about a residue (its type, expected atoms, torsion angles etc).
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Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.rnaClassDescriptionA type of molecule (RNA or protein).A structure parsed from a PDB file.A residue (nucleotide or amino acid).A fragment of a residue with a set of expected atoms and a set of possible other atoms.A provider of detailed information about a residue (its type, expected atoms, torsion angles etc).
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Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.structureClassDescriptionA residue (nucleotide or amino acid).A collection of residues.
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Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.structure.formats
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Classes in pl.poznan.put.pdb.analysis used by pl.poznan.put.torsionClassDescriptionA type of molecule (RNA or protein).A residue (nucleotide or amino acid).