Package pl.poznan.put.rna

package pl.poznan.put.rna

Class	Description
ChainReorderer	A set of methods to reorder chains in an RNA structure.
Chi	A glycosidic bond torsion angle (chi), which is defined differently for purines and pyrimidines.
ChiRange	A range description for chi torsion angle type as defined in Saenger's "Principles...".
ImmutableInteractionType	Immutable implementation of InteractionType.
ImmutableInteractionType.Builder	Builds instances of type ImmutableInteractionType.
ImmutablePhosphate	Immutable implementation of Phosphate.
ImmutablePhosphate.Builder	Builds instances of type ImmutablePhosphate.
ImmutablePseudophasePuckerType	Immutable implementation of PseudophasePuckerType.
ImmutablePseudophasePuckerType.Builder	Builds instances of type ImmutablePseudophasePuckerType.
ImmutableRibose	Immutable implementation of Ribose.
ImmutableRibose.Builder	Builds instances of type ImmutableRibose.
InteractionType	A type of interaction between two nucleotides.
NucleicAcidResidueComponent	A component of a nucleotide.
Nucleobase	A nucleobase (adenine, cytosine, guanine, uracil or thymine).
Nucleotide	A nucleotide (A, C, G, U or T) with all details regarding atoms, torsion angles, etc.
NucleotideComponentType	A type of the nucleotide component.
NucleotideTorsionAngle	A torsion angle defined in a nucleotide.
Phosphate	A phosphate, part of RNA backbone.
PseudophasePuckerType	An angle describing the pseudophase pucker.
Pseudorotation	A range of pseudorotation values with their descriptions.
Purine	A purine (adenine or guanine).
Pyrimidine	A pyrimidine (cytosine, uracil or thymine).
Ribose	A ribose, part of RNA backbone.