Package pl.poznan.put.structure
package pl.poznan.put.structure
Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
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ClassDescriptionA pair of residues with metadata taken from analysis tool.A pairing between two nucleotides' bases.A set of methods to analyze 3D data to extract the canonical 2D structure.A pair of interacting nucleotides with classification info.A single symbol in a dot-bracket structure.An information whether a base pair originated from a helix.Immutable implementation of
AnalyzedBasePair.Builds instances of typeImmutableAnalyzedBasePair.Immutable implementation ofBasePair.Builds instances of typeImmutableBasePair.Immutable implementation ofDotBracketSymbol.Builds instances of typeImmutableDotBracketSymbol.Immutable implementation ofQuantifiedBasePair.Builds instances of typeImmutableQuantifiedBasePair.A base pair which is classified and quantified with numerical parameters.