Package pl.poznan.put.pdb.analysis
package pl.poznan.put.pdb.analysis
Contains classes which work on data from PDB or mmCIF files.
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ClassDescriptionA structure which detects residues from atoms alone and then chains from residues.A container of one or more PDB files converted from a single mmCIF file.A converter from mmCIF to one or more PDB files.A structure parsed from an mmCIF file.A parser of mmCIF format.A default implementation of a structure parsed from an mmCIF file.A default implementation of a structure parsed from a PDB file.A default implementation of a residue (nucleotide or amino acid).A container for a list of residues.Immutable implementation of
CifContainer.Builds instances of typeImmutableCifContainer.Immutable implementation ofDefaultCifModel.Builds instances of typeImmutableDefaultCifModel.Immutable implementation ofDefaultPdbModel.Builds instances of typeImmutableDefaultPdbModel.Immutable implementation ofDefaultPdbResidue.Builds instances of typeImmutableDefaultPdbResidue.Immutable implementation ofDefaultResidueCollection.Builds instances of typeImmutableDefaultResidueCollection.Immutable implementation ofPdbChain.Builds instances of typeImmutablePdbChain.Immutable implementation ofPdbCompactFragment.Builds instances of typeImmutablePdbCompactFragment.Immutable implementation ofResidueTorsionAngles.Builds instances of typeImmutableResidueTorsionAngles.A set of PDB files which all correspond to the same structure and also their chain names' mapping.A type of molecule (RNA or protein).A chain in a structure.A collection of residues such that (i, i+1) are connected.A structure parsed from a PDB file.A parser of PDB format.A residue (nucleotide or amino acid).A collection of residues.A builder that can merge many residue collections in one mmCIF file.A builder that can merge many residue collections in one PDB file.A fragment of a residue with a set of expected atoms and a set of possible other atoms.A provider of detailed information about a residue (its type, expected atoms, torsion angles etc).A collection of torsion angles values for a single residue.A detector of residue type based on its name and atom content.A collection of residues with a common molecule type (RNA or protein).