Package pl.poznan.put.pdb.analysis

Class PdbChain

java.lang.Object

pl.poznan.put.pdb.analysis.PdbChain

All Implemented Interfaces:

Serializable, Comparable<PdbChain>, ResidueCollection, SingleTypedResidueCollection

Direct Known Subclasses:

ImmutablePdbChain

@Immutable
public abstract class PdbChain
extends Object
implements Comparable<PdbChain>, SingleTypedResidueCollection

A chain in a structure.

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface pl.poznan.put.pdb.analysis.ResidueCollection

ResidueCollection.CifBuilder, ResidueCollection.PdbBuilder

Constructor Summary

Constructors

Constructor	Description
PdbChain()

Method Summary

Modifier and Type	Method	Description
final int	compareTo(PdbChain t)
abstract String	identifier()
abstract List<PdbResidue>	residues()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface pl.poznan.put.pdb.analysis.ResidueCollection

filteredAtoms, findBondLengthViolations, findResidue, hasResidue, indexOf, namedResidueIdentifiers, residueIdentifiers, sequence, toCif, toPdb, withoutAlternateLocations

Methods inherited from interface pl.poznan.put.pdb.analysis.SingleTypedResidueCollection

moleculeType

Constructor Details

PdbChain

public PdbChain()

Method Details

identifier

@Parameter(order=1)
public abstract String identifier()

Returns:

The chain identifier.

residues

@Parameter(order=2)
public abstract List<PdbResidue> residues()

Specified by:

residues in interface ResidueCollection

Returns:

The list of residues.

compareTo

public final int compareTo(@Nonnull
 PdbChain t)

Specified by:

compareTo in interface Comparable<PdbChain>