Uses of Class
pl.poznan.put.pdb.analysis.ImmutableDefaultCifModel.Builder

Packages that use ImmutableDefaultCifModel.Builder

Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.

Uses of ImmutableDefaultCifModel.Builder in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return ImmutableDefaultCifModel.Builder

Modifier and Type	Method	Description
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllAtoms(Iterable<? extends PdbAtomLine> elements)	Adds elements to atoms list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllBasePairs(Iterable<? extends QuantifiedBasePair> elements)	Adds elements to basePairs list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllChainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)	Adds elements to chainTerminatedAfter set.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllMissingResidues(Iterable<? extends PdbRemark465Line> elements)	Adds elements to missingResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAllModifiedResidues(Iterable<? extends PdbModresLine> elements)	Adds elements to modifiedResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAtoms(PdbAtomLine element)	Adds one element to atoms list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addAtoms(PdbAtomLine... elements)	Adds elements to atoms list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addBasePairs(QuantifiedBasePair element)	Adds one element to basePairs list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addBasePairs(QuantifiedBasePair... elements)	Adds elements to basePairs list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addChainTerminatedAfter(PdbResidueIdentifier element)	Adds one element to chainTerminatedAfter set.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addChainTerminatedAfter(PdbResidueIdentifier... elements)	Adds elements to chainTerminatedAfter set.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addMissingResidues(PdbRemark465Line element)	Adds one element to missingResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addMissingResidues(PdbRemark465Line... elements)	Adds elements to missingResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addModifiedResidues(PdbModresLine element)	Adds one element to modifiedResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.addModifiedResidues(PdbModresLine... elements)	Adds elements to modifiedResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.atoms(Iterable<? extends PdbAtomLine> elements)	Sets or replaces all elements for atoms list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.basePairs(Iterable<? extends QuantifiedBasePair> elements)	Sets or replaces all elements for basePairs list.
static ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.builder()	Creates a builder for ImmutableDefaultCifModel.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.chainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)	Sets or replaces all elements for chainTerminatedAfter set.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.experimentalData(PdbExpdtaLine experimentalData)	Initializes the value for the experimentalData attribute.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(AbstractPdbModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.AbstractPdbModel instance.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(CifModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.CifModel instance.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(DefaultCifModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.DefaultCifModel instance.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.from(PdbModel instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.analysis.PdbModel instance.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.header(PdbHeaderLine header)	Initializes the value for the header attribute.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.missingResidues(Iterable<? extends PdbRemark465Line> elements)	Sets or replaces all elements for missingResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.modelNumber(int modelNumber)	Initializes the value for the modelNumber attribute.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.modifiedResidues(Iterable<? extends PdbModresLine> elements)	Sets or replaces all elements for modifiedResidues list.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.resolution(PdbRemark2Line resolution)	Initializes the value for the resolution attribute.
final ImmutableDefaultCifModel.Builder	ImmutableDefaultCifModel.Builder.title(String title)	Initializes the value for the title attribute.