Uses of Class
pl.poznan.put.pdb.analysis.ImmutableDefaultCifModel

Packages that use ImmutableDefaultCifModel

Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.

Uses of ImmutableDefaultCifModel in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return ImmutableDefaultCifModel

Modifier and Type	Method	Description
ImmutableDefaultCifModel	ImmutableDefaultCifModel.Builder.build()	Builds a new ImmutableDefaultCifModel.
static ImmutableDefaultCifModel	ImmutableDefaultCifModel.copyOf(DefaultCifModel instance)	Creates an immutable copy of a DefaultCifModel value.
static ImmutableDefaultCifModel	ImmutableDefaultCifModel.of(PdbHeaderLine header, PdbExpdtaLine experimentalData, PdbRemark2Line resolution, int modelNumber, Iterable<? extends PdbAtomLine> atoms, Iterable<? extends PdbModresLine> modifiedResidues, Iterable<? extends PdbRemark465Line> missingResidues, String title, Iterable<? extends PdbResidueIdentifier> chainTerminatedAfter, Iterable<? extends QuantifiedBasePair> basePairs)	Construct a new immutable DefaultCifModel instance.
static ImmutableDefaultCifModel	ImmutableDefaultCifModel.of(PdbHeaderLine header, PdbExpdtaLine experimentalData, PdbRemark2Line resolution, int modelNumber, List<PdbAtomLine> atoms, List<PdbModresLine> modifiedResidues, List<PdbRemark465Line> missingResidues, String title, Set<PdbResidueIdentifier> chainTerminatedAfter, List<QuantifiedBasePair> basePairs)	Construct a new immutable DefaultCifModel instance.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withAtoms(Iterable<? extends PdbAtomLine> elements)	Copy the current immutable object with elements that replace the content of atoms.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withAtoms(PdbAtomLine... elements)	Copy the current immutable object with elements that replace the content of atoms.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withBasePairs(Iterable<? extends QuantifiedBasePair> elements)	Copy the current immutable object with elements that replace the content of basePairs.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withBasePairs(QuantifiedBasePair... elements)	Copy the current immutable object with elements that replace the content of basePairs.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withChainTerminatedAfter(Iterable<? extends PdbResidueIdentifier> elements)	Copy the current immutable object with elements that replace the content of chainTerminatedAfter.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withChainTerminatedAfter(PdbResidueIdentifier... elements)	Copy the current immutable object with elements that replace the content of chainTerminatedAfter.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withExperimentalData(PdbExpdtaLine value)	Copy the current immutable object by setting a value for the experimentalData attribute.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withHeader(PdbHeaderLine value)	Copy the current immutable object by setting a value for the header attribute.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withMissingResidues(Iterable<? extends PdbRemark465Line> elements)	Copy the current immutable object with elements that replace the content of missingResidues.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withMissingResidues(PdbRemark465Line... elements)	Copy the current immutable object with elements that replace the content of missingResidues.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withModelNumber(int value)	Copy the current immutable object by setting a value for the modelNumber attribute.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withModifiedResidues(Iterable<? extends PdbModresLine> elements)	Copy the current immutable object with elements that replace the content of modifiedResidues.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withModifiedResidues(PdbModresLine... elements)	Copy the current immutable object with elements that replace the content of modifiedResidues.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withResolution(PdbRemark2Line value)	Copy the current immutable object by setting a value for the resolution attribute.
final ImmutableDefaultCifModel	ImmutableDefaultCifModel.withTitle(String value)	Copy the current immutable object by setting a value for the title attribute.