BioCommons 3.1.8 API
Packages
Package
Description
Collection of utility classes to work with atom types, names and atomic bonds.
Classes to deal with angular data and circular statistics.
Contains classes useful in conversion between Cartesian and trigonometric representations.
Package contains useful enums.
Exceptions thrown when operations on circular values fail.
Classes which deal with samples of data.
Contains classes with useful constant values and static methods.
Interfaces useful in various contexts to clean up class design.
A set of enums describing different notations used in structural biology.
Contains classes responsible for PDB/mmCIF data modelling and analysis.
Contains classes which work on data from PDB or mmCIF files.
Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
Package contains classes that handle pseudoknots in secondary structure.
A set of dynamic programming solutions to pseudoknot detection.s
Contains classes dealing with torsion angles handling.
Contains classes providing various useful functions.
Contains classes useful for SVG processing.