Package pl.poznan.put.structure.pseudoknots

package pl.poznan.put.structure.pseudoknots

Package contains classes that handle pseudoknots in secondary structure.

Related Packages

Package	Description
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
pl.poznan.put.structure.pseudoknots.dp	A set of dynamic programming solutions to pseudoknot detection.s
pl.poznan.put.structure.pseudoknots.elimination
pl.poznan.put.structure.formats

Class	Description
ConflictGraph	A graph of conflicts between regions.
ImmutableConflictGraph	Immutable implementation of ConflictGraph.
ImmutableConflictGraph.Builder	Builds instances of type ImmutableConflictGraph.
ImmutableRegion	Immutable implementation of Region.
ImmutableRegion.Builder	Builds instances of type ImmutableRegion.
PseudoknotFinder	A finder of pseudoknots in RNA secondary structure.
Region	A collection of pairs (BPSEQ entries) which are consecutive in sequence.