Package pl.poznan.put.structure.pseudoknots.elimination

package pl.poznan.put.structure.pseudoknots.elimination

Related Packages

Package	Description
pl.poznan.put.structure.pseudoknots	Package contains classes that handle pseudoknots in secondary structure.
pl.poznan.put.structure.pseudoknots.dp	A set of dynamic programming solutions to pseudoknot detection.s

Class	Description
AbstractRegionRemover	Java implementation of region removal algorithm as presented in: Smit, S. et al., 2008.
ImmutableMaxConflicts	Immutable implementation of MaxConflicts.
ImmutableMaxConflicts.Builder	Builds instances of type ImmutableMaxConflicts.
ImmutableMinGain	Immutable implementation of MinGain.
ImmutableMinGain.Builder	Builds instances of type ImmutableMinGain.
MaxConflicts	Java implementation of Elimination Conflicts algorithm as presented in: Smit, S. et al., 2008.
MinGain	Java implementation of Elimination Gain algorithm as presented in: Smit, S. et al., 2008.
RegionRemover	A pseudoknot finder algorithm which works by selecting a region to remove in each iteration.