Package pl.poznan.put.pdb.analysis

Class PdbParser

java.lang.Object

pl.poznan.put.pdb.analysis.PdbParser

public class PdbParser
extends Object

A parser of PDB format.

Constructor Summary

Constructors

Constructor	Description
PdbParser()	Creates an instance with strictMode set to true.
PdbParser(boolean strictMode)	Creates an instance with the possibility to set strictMode.

Method Summary

Modifier and Type	Method	Description
final List<PdbModel>	parse(String structureContent)	Parses a string in PDB format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PdbParser

public PdbParser(boolean strictMode)

Creates an instance with the possibility to set strictMode.

Parameters:

strictMode - If false, then some of the checks on PDB format conformity are relaxed.

PdbParser

public PdbParser()

Creates an instance with strictMode set to true.

Method Details

parse

public final List<PdbModel> parse(String structureContent)

Parses a string in PDB format.

Parameters:

structureContent - A string containing data in PDB format.

Returns:

An object representing the parsed data.