Package pl.poznan.put.pdb.analysis

Interface CifModel

All Superinterfaces:

PdbModel, ResidueCollection, Serializable

All Known Implementing Classes:

DefaultCifModel, ImmutableDefaultCifModel

public interface CifModel
extends PdbModel

A structure parsed from an mmCIF file.

Nested Class Summary

Nested classes/interfaces inherited from interface pl.poznan.put.pdb.analysis.ResidueCollection

ResidueCollection.CifBuilder, ResidueCollection.PdbBuilder

Method Summary

Modifier and Type	Method	Description
List<QuantifiedBasePair>	basePairs()

Methods inherited from interface pl.poznan.put.pdb.analysis.PdbModel

atoms, chains, chainTerminatedAfter, containsAny, experimentalData, filteredMissing, filteredNewInstance, findChainContainingResidue, header, idCode, isModified, missingResidues, modelNumber, modificationDetails, modifiedResidues, resolution, title

Methods inherited from interface pl.poznan.put.pdb.analysis.ResidueCollection

filteredAtoms, findBondLengthViolations, findResidue, hasResidue, indexOf, namedResidueIdentifiers, residueIdentifiers, residues, sequence, toCif, toPdb, withoutAlternateLocations

Method Details

basePairs

List<QuantifiedBasePair> basePairs()

Returns:

The list of base pairs as parsed from mmCIF file.