Package pl.poznan.put.pdb.analysis

Class ResidueCollection.PdbBuilder

java.lang.Object

pl.poznan.put.pdb.analysis.ResidueCollection.PdbBuilder

Enclosing interface:

ResidueCollection

public static final class ResidueCollection.PdbBuilder
extends Object

A builder that can merge many residue collections in one PDB file.

Constructor Summary

Constructors

Constructor	Description
PdbBuilder()

Method Summary

Modifier and Type	Method	Description
ResidueCollection.PdbBuilder	add(ResidueCollection residueCollection)	Add a new residue collection to the builder.
ResidueCollection.PdbBuilder	add(ResidueCollection residueCollection, String name)	Add a new named residue collection to the builder.
String	build()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PdbBuilder

public PdbBuilder()

Method Details

add

public ResidueCollection.PdbBuilder add(ResidueCollection residueCollection)

Add a new residue collection to the builder.

Parameters:

residueCollection - The residue collection to build.

Returns:

This builder instance.

add

public ResidueCollection.PdbBuilder add(ResidueCollection residueCollection,
 String name)

Add a new named residue collection to the builder. A line with name of the collection is prepended to the ATOM lines.

Parameters:

residueCollection - The residue collection to build.

name - Name of the collection, which will be prepended to ATOM lines if not empty.

Returns:

This builder instance.

build

public String build()

Returns:

The string content in PDB format.