Package pl.poznan.put.structure

Class CanonicalStructureExtractor

java.lang.Object

pl.poznan.put.structure.CanonicalStructureExtractor

public final class CanonicalStructureExtractor
extends Object

A set of methods to analyze 3D data to extract the canonical 2D structure.

Method Summary

Modifier and Type	Method	Description
static Collection<ClassifiedBasePair>	basePairs(ResidueCollection residueCollection)
static BpSeq	bpSeq(ResidueCollection residueCollection)	Extracts the canonical secondary structure from the 3D data and outputs it in BPSEQ format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

bpSeq

public static BpSeq bpSeq(ResidueCollection residueCollection)

Extracts the canonical secondary structure from the 3D data and outputs it in BPSEQ format.

Parameters:

residueCollection - A collection of residues to analyze.

Returns:

A secondary structure in BPSEQ format.

basePairs

public static Collection<ClassifiedBasePair> basePairs(ResidueCollection residueCollection)