Package pl.poznan.put.structure

Class ImmutableAnalyzedBasePair.Builder

java.lang.Object
pl.poznan.put.structure.ImmutableAnalyzedBasePair.Builder
Enclosing class:
ImmutableAnalyzedBasePair
@NotThreadSafe public static final class ImmutableAnalyzedBasePair.Builder extends Object
Builds instances of type ImmutableAnalyzedBasePair. Initialize attributes and then invoke the build() method to create an immutable instance.

Builder is not thread-safe and generally should not be stored in a field or collection, but instead used immediately to create instances.

  • Method Details

    • from

      public final ImmutableAnalyzedBasePair.Builder from(ClassifiedBasePair instance)
      Fill a builder with attribute values from the provided pl.poznan.put.structure.ClassifiedBasePair instance.
      Parameters:
      instance - The instance from which to copy values
      Returns:
      this builder for use in a chained invocation

    • from

      public final ImmutableAnalyzedBasePair.Builder from(AnalyzedBasePair instance)
      Fill a builder with attribute values from the provided pl.poznan.put.structure.AnalyzedBasePair instance.
      Parameters:
      instance - The instance from which to copy values
      Returns:
      this builder for use in a chained invocation

    • basePair

      public final ImmutableAnalyzedBasePair.Builder basePair(BasePair basePair)
      Initializes the value for the basePair attribute.
      Parameters:
      basePair - The value for basePair
      Returns:
      this builder for use in a chained invocation

    • interactionType

      public final ImmutableAnalyzedBasePair.Builder interactionType(InteractionType interactionType)
      Initializes the value for the interactionType attribute.

      If not set, this attribute will have a default value as returned by the initializer of interactionType.

      Parameters:
      interactionType - The value for interactionType
      Returns:
      this builder for use in a chained invocation

    • saenger

      public final ImmutableAnalyzedBasePair.Builder saenger(Saenger saenger)
      Initializes the value for the saenger attribute.

      If not set, this attribute will have a default value as returned by the initializer of saenger.

      Parameters:
      saenger - The value for saenger
      Returns:
      this builder for use in a chained invocation

    • leontisWesthof

      public final ImmutableAnalyzedBasePair.Builder leontisWesthof(LeontisWesthof leontisWesthof)
      Initializes the value for the leontisWesthof attribute.

      If not set, this attribute will have a default value as returned by the initializer of leontisWesthof.

      Parameters:
      leontisWesthof - The value for leontisWesthof
      Returns:
      this builder for use in a chained invocation

    • bph

      public final ImmutableAnalyzedBasePair.Builder bph(BPh bph)
      Initializes the value for the bph attribute.

      If not set, this attribute will have a default value as returned by the initializer of bph.

      Parameters:
      bph - The value for bph
      Returns:
      this builder for use in a chained invocation

    • br

      public final ImmutableAnalyzedBasePair.Builder br(BR br)
      Initializes the value for the br attribute.

      If not set, this attribute will have a default value as returned by the initializer of br.

      Parameters:
      br - The value for br
      Returns:
      this builder for use in a chained invocation

    • stackingTopology

      public final ImmutableAnalyzedBasePair.Builder stackingTopology(StackingTopology stackingTopology)
      Initializes the value for the stackingTopology attribute.

      If not set, this attribute will have a default value as returned by the initializer of stackingTopology.

      Parameters:
      stackingTopology - The value for stackingTopology
      Returns:
      this builder for use in a chained invocation

    • isRepresented

      public final ImmutableAnalyzedBasePair.Builder isRepresented(boolean isRepresented)
      Initializes the value for the isRepresented attribute.

      If not set, this attribute will have a default value as returned by the initializer of isRepresented.

      Parameters:
      isRepresented - The value for isRepresented
      Returns:
      this builder for use in a chained invocation

    • build

      public ImmutableAnalyzedBasePair build()
      Builds a new ImmutableAnalyzedBasePair.
      Returns:
      An immutable instance of AnalyzedBasePair
      Throws:
      IllegalStateException - if any required attributes are missing