Uses of Package
pl.poznan.put.notation

Packages that use pl.poznan.put.notation

Package	Description
pl.poznan.put.notation	A set of enums describing different notations used in structural biology.
pl.poznan.put.rna
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)

Classes in pl.poznan.put.notation used by pl.poznan.put.notation

Class	Description
BPh	A base-phosphate notation described in: Classification and Energetics of the Base-Phosphate Interactions in RNA.
BR	A base-ribose notation described in: Classification and Energetics of the Base-Phosphate Interactions in RNA.
LeontisWesthof	A classification of RNA base pairs described in: Geometric Nomenclature and Classification of RNA Base Pairs.
NucleobaseEdge	An edge of the nucleobase.
Saenger	A classification of RNA base pairs described in Principles of Nucleic Acid Structure.
StackingTopology	Stacking topologies are described in: New Metrics for Comparing and Assessing Discrepancies between RNA 3D Structures and Models.
Stericity	A base pair stericity, either cis or trans.

Classes in pl.poznan.put.notation used by pl.poznan.put.rna

Class	Description
NucleobaseEdge	An edge of the nucleobase.

Classes in pl.poznan.put.notation used by pl.poznan.put.structure

Class	Description
BPh	A base-phosphate notation described in: Classification and Energetics of the Base-Phosphate Interactions in RNA.
BR	A base-ribose notation described in: Classification and Energetics of the Base-Phosphate Interactions in RNA.
LeontisWesthof	A classification of RNA base pairs described in: Geometric Nomenclature and Classification of RNA Base Pairs.
Saenger	A classification of RNA base pairs described in Principles of Nucleic Acid Structure.
StackingTopology	Stacking topologies are described in: New Metrics for Comparing and Assessing Discrepancies between RNA 3D Structures and Models.