Uses of Enum
pl.poznan.put.notation.Saenger

Packages that use Saenger

Package	Description
pl.poznan.put.notation	A set of enums describing different notations used in structural biology.
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)

Uses of Saenger in pl.poznan.put.notation

Methods in pl.poznan.put.notation that return Saenger

Modifier and Type	Method	Description
static Saenger	Saenger.assumeCanonical(BasePair basePair)	Checks which one of Saenger instances matches a canonical base pair of provided sequence.
static Saenger	Saenger.fromNumber(int number)	Matches a value in range 1-28 to an instance of this class with the same value written as a Roman numeral.
static Saenger	Saenger.fromString(String str)	Finds an enum that matches the given name or return UNKNOWN otherwise.
static Saenger	Saenger.valueOf(String name)	Returns the enum constant of this type with the specified name.
static Saenger[]	Saenger.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in pl.poznan.put.notation with parameters of type Saenger

Modifier and Type	Method	Description
static boolean	Saenger.isCanonical(Saenger saenger)	Checks if instance of Saenger represents a canonical base pair (XIX, XX and XXVIII).

Uses of Saenger in pl.poznan.put.structure

Methods in pl.poznan.put.structure that return Saenger

Modifier and Type	Method	Description
Saenger	AnalyzedBasePair.saenger()
default Saenger	ClassifiedBasePair.saenger()
Saenger	ImmutableAnalyzedBasePair.saenger()
Saenger	ImmutableQuantifiedBasePair.saenger()
Saenger	QuantifiedBasePair.saenger()

Methods in pl.poznan.put.structure with parameters of type Saenger

Modifier and Type	Method	Description
final ImmutableAnalyzedBasePair.Builder	ImmutableAnalyzedBasePair.Builder.saenger(Saenger saenger)	Initializes the value for the saenger attribute.
final ImmutableQuantifiedBasePair.Builder	ImmutableQuantifiedBasePair.Builder.saenger(Saenger saenger)	Initializes the value for the saenger attribute.
final ImmutableAnalyzedBasePair	ImmutableAnalyzedBasePair.withSaenger(Saenger value)	Copy the current immutable object by setting a value for the saenger attribute.
final ImmutableQuantifiedBasePair	ImmutableQuantifiedBasePair.withSaenger(Saenger value)	Copy the current immutable object by setting a value for the saenger attribute.