Uses of Class
pl.poznan.put.structure.BasePair

Packages that use BasePair

Package	Description
pl.poznan.put.notation	A set of enums describing different notations used in structural biology.
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)

Uses of BasePair in pl.poznan.put.notation

Methods in pl.poznan.put.notation with parameters of type BasePair

Modifier and Type	Method	Description
static Saenger	Saenger.assumeCanonical(BasePair basePair)	Checks which one of Saenger instances matches a canonical base pair of provided sequence.

Uses of BasePair in pl.poznan.put.structure

Subclasses of BasePair in pl.poznan.put.structure

Modifier and Type	Class	Description
final class	ImmutableBasePair	Immutable implementation of BasePair.

Methods in pl.poznan.put.structure that return BasePair

Modifier and Type	Method	Description
abstract BasePair	AnalyzedBasePair.basePair()
BasePair	ClassifiedBasePair.basePair()
BasePair	ImmutableAnalyzedBasePair.basePair()
BasePair	ImmutableQuantifiedBasePair.basePair()
abstract BasePair	QuantifiedBasePair.basePair()
final BasePair	BasePair.invert()

Methods in pl.poznan.put.structure with parameters of type BasePair

Modifier and Type	Method	Description
final ImmutableAnalyzedBasePair.Builder	ImmutableAnalyzedBasePair.Builder.basePair(BasePair basePair)	Initializes the value for the basePair attribute.
final ImmutableQuantifiedBasePair.Builder	ImmutableQuantifiedBasePair.Builder.basePair(BasePair basePair)	Initializes the value for the basePair attribute.
final int	BasePair.compareTo(BasePair t)
static ImmutableBasePair	ImmutableBasePair.copyOf(BasePair instance)	Creates an immutable copy of a BasePair value.
final ImmutableBasePair.Builder	ImmutableBasePair.Builder.from(BasePair instance)	Fill a builder with attribute values from the provided BasePair instance.
static ImmutableAnalyzedBasePair	ImmutableAnalyzedBasePair.of(BasePair basePair)	Construct a new immutable AnalyzedBasePair instance.
static ImmutableQuantifiedBasePair	ImmutableQuantifiedBasePair.of(BasePair basePair, double shear, double stretch, double stagger, double buckle, double propeller, double opening)	Construct a new immutable QuantifiedBasePair instance.
final ImmutableAnalyzedBasePair	ImmutableAnalyzedBasePair.withBasePair(BasePair value)	Copy the current immutable object by setting a value for the basePair attribute.
final ImmutableQuantifiedBasePair	ImmutableQuantifiedBasePair.withBasePair(BasePair value)	Copy the current immutable object by setting a value for the basePair attribute.