Uses of Interface
pl.poznan.put.pdb.ChainNumberICode
Packages that use ChainNumberICode
Package
Description
Contains classes responsible for PDB/mmCIF data modelling and analysis.
Contains classes which work on data from PDB or mmCIF files.
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Uses of ChainNumberICode in pl.poznan.put.pdb
Classes in pl.poznan.put.pdb that implement ChainNumberICodeModifier and TypeClassDescriptionfinal class
Immutable implementation ofPdbAtomLine
.final class
Immutable implementation ofPdbModresLine
.final class
Immutable implementation ofPdbNamedResidueIdentifier
.final class
Immutable implementation ofPdbRemark465Line
.final class
Immutable implementation ofPdbResidueIdentifier
.class
Representation of ATOM and HETATM lines in both PDB and mmCIF files.class
A representation of MODRES line in PDB format.class
Class that represents a residue identifier with a known name.class
A representation of REMARK 465 in PDB format which describes missing residues.class
A residue identifier is used only to address a residue in the structure.Methods in pl.poznan.put.pdb with parameters of type ChainNumberICodeModifier and TypeMethodDescriptiondefault int
ChainNumberICode.compareTo
(ChainNumberICode t) ImmutablePdbAtomLine.Builder.from
(ChainNumberICode instance) Fill a builder with attribute values from the providedpl.poznan.put.pdb.ChainNumberICode
instance.ImmutablePdbModresLine.Builder.from
(ChainNumberICode instance) Fill a builder with attribute values from the providedpl.poznan.put.pdb.ChainNumberICode
instance.ImmutablePdbNamedResidueIdentifier.Builder.from
(ChainNumberICode instance) Fill a builder with attribute values from the providedpl.poznan.put.pdb.ChainNumberICode
instance.ImmutablePdbRemark465Line.Builder.from
(ChainNumberICode instance) Fill a builder with attribute values from the providedpl.poznan.put.pdb.ChainNumberICode
instance.ImmutablePdbResidueIdentifier.Builder.from
(ChainNumberICode instance) Fill a builder with attribute values from the providedpl.poznan.put.pdb.ChainNumberICode
instance.static PdbResidueIdentifier
PdbResidueIdentifier.from
(ChainNumberICode chainNumberICode) Creates an instance of this class from any implementation ofChainNumberICode
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Uses of ChainNumberICode in pl.poznan.put.pdb.analysis
Subinterfaces of ChainNumberICode in pl.poznan.put.pdb.analysisClasses in pl.poznan.put.pdb.analysis that implement ChainNumberICodeModifier and TypeClassDescriptionclass
A default implementation of a residue (nucleotide or amino acid).final class
Immutable implementation ofDefaultPdbResidue
.Methods in pl.poznan.put.pdb.analysis with parameters of type ChainNumberICodeModifier and TypeMethodDescriptiondefault SingleTypedResidueCollection
PdbModel.findChainContainingResidue
(ChainNumberICode query) Finds a chain which has a given residue.default PdbResidue
ResidueCollection.findResidue
(ChainNumberICode query) Finds a residue by a triplet (chain, number, icode).default boolean
ResidueCollection.hasResidue
(ChainNumberICode query) Checks if a given (chain, number, icode) is present in this collection of residues.default int
ResidueCollection.indexOf
(ChainNumberICode query) Finds a residue by a triplet (chain, number, icode).