Package pl.poznan.put.pdb

Class PdbRemark465Line

java.lang.Object

pl.poznan.put.pdb.PdbRemark465Line

All Implemented Interfaces:

Serializable, Comparable<ChainNumberICode>, ChainNumberICode

Direct Known Subclasses:

ImmutablePdbRemark465Line

@Immutable
public abstract class PdbRemark465Line
extends Object
implements ChainNumberICode

A representation of REMARK 465 in PDB format which describes missing residues.

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static final String	PROLOGUE

Constructor Summary

Constructors

Constructor	Description
PdbRemark465Line()

Method Summary

Modifier and Type	Method	Description
abstract String	chainIdentifier()
abstract Optional<String>	insertionCode()
static boolean	isCommentLine(String line)	Checks if line is just a comment or a line with actual information.
abstract int	modelNumber()
static PdbRemark465Line	parse(String line)	Parses a line of text to create an instance of this class.
abstract String	residueName()
abstract int	residueNumber()
final String	toPdb()
final PdbResidue	toResidue()	Creates an instance of DefaultPdbResidue marked as missing and without atoms.
final String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface pl.poznan.put.pdb.ChainNumberICode

compareTo

Field Details

PROLOGUE

public static final String PROLOGUE

See Also:

• Constant Field Values

Constructor Details

PdbRemark465Line

public PdbRemark465Line()

Method Details

isCommentLine

public static boolean isCommentLine(String line)

Checks if line is just a comment or a line with actual information.

Parameters:

line - A line of text.

Returns:

True if line contains a comment only.

parse

public static PdbRemark465Line parse(String line)

Parses a line of text to create an instance of this class.

Parameters:

line - A line of text starting with REMARK 465.

Returns:

An instance of this class

modelNumber

@Parameter(order=1)
public abstract int modelNumber()

Returns:

The value of the modelNumber attribute

residueName

@Parameter(order=2)
public abstract String residueName()

Returns:

The value of the residueName attribute

chainIdentifier

@Parameter(order=3)
public abstract String chainIdentifier()

Specified by:

chainIdentifier in interface ChainNumberICode

Returns:

The value of the chainIdentifier attribute

residueNumber

@Parameter(order=4)
public abstract int residueNumber()

Specified by:

residueNumber in interface ChainNumberICode

Returns:

The value of the residueNumber attribute

insertionCode

@Parameter(order=5)
public abstract Optional<String> insertionCode()

Specified by:

insertionCode in interface ChainNumberICode

Returns:

The value of the insertionCode attribute

toString

public final String toString()

Overrides:

toString in class Object

toPdb

public final String toPdb()

Returns:

A line in PDB format.

toResidue

public final PdbResidue toResidue()

Creates an instance of DefaultPdbResidue marked as missing and without atoms.

Returns:

An instance of a missing residue.