Package pl.poznan.put.pdb

Class ImmutablePdbAtomLine.Builder

java.lang.Object
pl.poznan.put.pdb.ImmutablePdbAtomLine.Builder
Enclosing class:
ImmutablePdbAtomLine
@NotThreadSafe public static final class ImmutablePdbAtomLine.Builder extends Object
Builds instances of type ImmutablePdbAtomLine. Initialize attributes and then invoke the build() method to create an immutable instance.

Builder is not thread-safe and generally should not be stored in a field or collection, but instead used immediately to create instances.

  • Method Details

    • from

      public final ImmutablePdbAtomLine.Builder from(ChainNumberICode instance)
      Fill a builder with attribute values from the provided pl.poznan.put.pdb.ChainNumberICode instance.
      Parameters:
      instance - The instance from which to copy values
      Returns:
      this builder for use in a chained invocation

    • from

      public final ImmutablePdbAtomLine.Builder from(PdbAtomLine instance)
      Fill a builder with attribute values from the provided pl.poznan.put.pdb.PdbAtomLine instance.
      Parameters:
      instance - The instance from which to copy values
      Returns:
      this builder for use in a chained invocation

    • serialNumber

      public final ImmutablePdbAtomLine.Builder serialNumber(int serialNumber)
      Initializes the value for the serialNumber attribute.
      Parameters:
      serialNumber - The value for serialNumber
      Returns:
      this builder for use in a chained invocation

    • atomName

      public final ImmutablePdbAtomLine.Builder atomName(String atomName)
      Initializes the value for the atomName attribute.
      Parameters:
      atomName - The value for atomName
      Returns:
      this builder for use in a chained invocation

    • alternateLocation

      public final ImmutablePdbAtomLine.Builder alternateLocation(String alternateLocation)
      Initializes the optional value alternateLocation to alternateLocation.
      Parameters:
      alternateLocation - The value for alternateLocation
      Returns:
      this builder for chained invocation

    • alternateLocation

      public final ImmutablePdbAtomLine.Builder alternateLocation(Optional<String> alternateLocation)
      Initializes the optional value alternateLocation to alternateLocation.
      Parameters:
      alternateLocation - The value for alternateLocation
      Returns:
      this builder for use in a chained invocation

    • residueName

      public final ImmutablePdbAtomLine.Builder residueName(String residueName)
      Initializes the value for the residueName attribute.
      Parameters:
      residueName - The value for residueName
      Returns:
      this builder for use in a chained invocation

    • chainIdentifier

      public final ImmutablePdbAtomLine.Builder chainIdentifier(String chainIdentifier)
      Initializes the value for the chainIdentifier attribute.
      Parameters:
      chainIdentifier - The value for chainIdentifier
      Returns:
      this builder for use in a chained invocation

    • residueNumber

      public final ImmutablePdbAtomLine.Builder residueNumber(int residueNumber)
      Initializes the value for the residueNumber attribute.
      Parameters:
      residueNumber - The value for residueNumber
      Returns:
      this builder for use in a chained invocation

    • insertionCode

      public final ImmutablePdbAtomLine.Builder insertionCode(String insertionCode)
      Initializes the optional value insertionCode to insertionCode.
      Parameters:
      insertionCode - The value for insertionCode
      Returns:
      this builder for chained invocation

    • insertionCode

      public final ImmutablePdbAtomLine.Builder insertionCode(Optional<String> insertionCode)
      Initializes the optional value insertionCode to insertionCode.
      Parameters:
      insertionCode - The value for insertionCode
      Returns:
      this builder for use in a chained invocation

    • x

      public final ImmutablePdbAtomLine.Builder x(double x)
      Initializes the value for the x attribute.
      Parameters:
      x - The value for x
      Returns:
      this builder for use in a chained invocation

    • y

      public final ImmutablePdbAtomLine.Builder y(double y)
      Initializes the value for the y attribute.
      Parameters:
      y - The value for y
      Returns:
      this builder for use in a chained invocation

    • z

      public final ImmutablePdbAtomLine.Builder z(double z)
      Initializes the value for the z attribute.
      Parameters:
      z - The value for z
      Returns:
      this builder for use in a chained invocation

    • occupancy

      public final ImmutablePdbAtomLine.Builder occupancy(double occupancy)
      Initializes the value for the occupancy attribute.
      Parameters:
      occupancy - The value for occupancy
      Returns:
      this builder for use in a chained invocation

    • temperatureFactor

      public final ImmutablePdbAtomLine.Builder temperatureFactor(double temperatureFactor)
      Initializes the value for the temperatureFactor attribute.
      Parameters:
      temperatureFactor - The value for temperatureFactor
      Returns:
      this builder for use in a chained invocation

    • elementSymbol

      public final ImmutablePdbAtomLine.Builder elementSymbol(String elementSymbol)
      Initializes the value for the elementSymbol attribute.
      Parameters:
      elementSymbol - The value for elementSymbol
      Returns:
      this builder for use in a chained invocation

    • charge

      public final ImmutablePdbAtomLine.Builder charge(String charge)
      Initializes the value for the charge attribute.
      Parameters:
      charge - The value for charge
      Returns:
      this builder for use in a chained invocation

    • build

      public ImmutablePdbAtomLine build()
      Builds a new ImmutablePdbAtomLine.
      Returns:
      An immutable instance of PdbAtomLine
      Throws:
      IllegalStateException - if any required attributes are missing