Uses of Class
pl.poznan.put.torsion.TorsionAngleValue

Packages that use TorsionAngleValue

Package	Description
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.
pl.poznan.put.rna
pl.poznan.put.torsion	Contains classes dealing with torsion angles handling.

Uses of TorsionAngleValue in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return types with arguments of type TorsionAngleValue

Modifier and Type	Method	Description
protected List<TorsionAngleValue>	ImmutableResidueTorsionAngles.values()
protected abstract List<TorsionAngleValue>	ResidueTorsionAngles.values()

Methods in pl.poznan.put.pdb.analysis with parameters of type TorsionAngleValue

Modifier and Type	Method	Description
final ImmutableResidueTorsionAngles.Builder	ImmutableResidueTorsionAngles.Builder.addValues(TorsionAngleValue element)	Adds one element to values list.
final ImmutableResidueTorsionAngles.Builder	ImmutableResidueTorsionAngles.Builder.addValues(TorsionAngleValue... elements)	Adds elements to values list.
final ImmutableResidueTorsionAngles	ImmutableResidueTorsionAngles.withValues(TorsionAngleValue... elements)	Copy the current immutable object with elements that replace the content of values.

Method parameters in pl.poznan.put.pdb.analysis with type arguments of type TorsionAngleValue

Modifier and Type	Method	Description
final ImmutableResidueTorsionAngles.Builder	ImmutableResidueTorsionAngles.Builder.addAllValues(Iterable<? extends TorsionAngleValue> elements)	Adds elements to values list.
static ImmutableResidueTorsionAngles	ImmutableResidueTorsionAngles.of(PdbResidueIdentifier identifier, Iterable<? extends TorsionAngleValue> values)	Construct a new immutable ResidueTorsionAngles instance.
static ImmutableResidueTorsionAngles	ImmutableResidueTorsionAngles.of(PdbResidueIdentifier identifier, List<TorsionAngleValue> values)	Construct a new immutable ResidueTorsionAngles instance.
final ImmutableResidueTorsionAngles.Builder	ImmutableResidueTorsionAngles.Builder.values(Iterable<? extends TorsionAngleValue> elements)	Sets or replaces all elements for values list.
final ImmutableResidueTorsionAngles	ImmutableResidueTorsionAngles.withValues(Iterable<? extends TorsionAngleValue> elements)	Copy the current immutable object with elements that replace the content of values.

Uses of TorsionAngleValue in pl.poznan.put.rna

Methods in pl.poznan.put.rna that return TorsionAngleValue

Modifier and Type	Method	Description
final TorsionAngleValue	PseudophasePuckerType.calculate(List<PdbResidue> residues, int currentIndex)	Calculates the value of pseudophase pucker according to the formula in Saenger's "Principles of ...".

Uses of TorsionAngleValue in pl.poznan.put.torsion

Subclasses of TorsionAngleValue in pl.poznan.put.torsion

Modifier and Type	Class	Description
final class	ImmutableTorsionAngleValue	Immutable implementation of TorsionAngleValue.

Methods in pl.poznan.put.torsion that return TorsionAngleValue

Modifier and Type	Method	Description
default TorsionAngleValue	AtomBasedTorsionAngleType.calculate(List<PdbResidue> residues, int currentIndex)	Calculates the value of this torsion angle (see Angle.torsionAngle(Vector3D, Vector3D, Vector3D, Vector3D)).
default TorsionAngleValue	AtomBasedTorsionAngleType.calculate(PdbAtomLine a1, PdbAtomLine a2, PdbAtomLine a3, PdbAtomLine a4)	Calculates a value of this torsion angle type given atoms explicitly.
final TorsionAngleValue	AverageTorsionAngleType.calculate(Collection<TorsionAngleValue> values)	Calculates the average torsion angle value by collecting basic angle values and creating an AngleSample out of them to get the mean direction.
final TorsionAngleValue	AverageTorsionAngleType.calculate(List<PdbResidue> residues, int currentIndex)	Calculates the average torsion angle value by calculating basic angle values and creating an AngleSample out of them to get the mean direction.
TorsionAngleValue	TorsionAngleType.calculate(List<PdbResidue> residues, int currentIndex)	Calculates the value of this torsion angle.

Methods in pl.poznan.put.torsion with parameters of type TorsionAngleValue

Modifier and Type	Method	Description
static ImmutableTorsionAngleValue	ImmutableTorsionAngleValue.copyOf(TorsionAngleValue instance)	Creates an immutable copy of a TorsionAngleValue value.
final ImmutableTorsionAngleValue.Builder	ImmutableTorsionAngleValue.Builder.from(TorsionAngleValue instance)	Fill a builder with attribute values from the provided TorsionAngleValue instance.

Method parameters in pl.poznan.put.torsion with type arguments of type TorsionAngleValue

Modifier and Type	Method	Description
final TorsionAngleValue	AverageTorsionAngleType.calculate(Collection<TorsionAngleValue> values)	Calculates the average torsion angle value by collecting basic angle values and creating an AngleSample out of them to get the mean direction.