Package pl.poznan.put.structure.pseudoknots.elimination

Interface RegionRemover

All Superinterfaces:

PseudoknotFinder

All Known Implementing Classes:

AbstractRegionRemover, ImmutableMaxConflicts, ImmutableMinGain, MaxConflicts, MinGain

public interface RegionRemover
extends PseudoknotFinder

A pseudoknot finder algorithm which works by selecting a region to remove in each iteration.

Method Summary

Modifier and Type	Method	Description
Region	selectRegionToRemove(ConflictGraph conflictGraph)	Uses data in the conflict graph to select one region to be removed.

Methods inherited from interface pl.poznan.put.structure.pseudoknots.PseudoknotFinder

findPseudoknots

Method Details

selectRegionToRemove

Region selectRegionToRemove(ConflictGraph conflictGraph)

Uses data in the conflict graph to select one region to be removed.

Parameters:

conflictGraph - The graph of conflicts between regions.

Returns:

A region to be removed.