Uses of Interface
pl.poznan.put.structure.pseudoknots.elimination.RegionRemover

Packages that use RegionRemover

Package	Description
pl.poznan.put.structure.pseudoknots.dp	A set of dynamic programming solutions to pseudoknot detection.s
pl.poznan.put.structure.pseudoknots.elimination

Uses of RegionRemover in pl.poznan.put.structure.pseudoknots.dp

Methods in pl.poznan.put.structure.pseudoknots.dp that return types with arguments of type RegionRemover

Modifier and Type	Method	Description
protected abstract Optional<RegionRemover>	DynamicProgrammingAll.regionRemover()
protected Optional<RegionRemover>	ImmutableDynamicProgrammingAll.regionRemover()

Methods in pl.poznan.put.structure.pseudoknots.dp with parameters of type RegionRemover

Modifier and Type	Method	Description
final ImmutableDynamicProgrammingAll.Builder	ImmutableDynamicProgrammingAll.Builder.regionRemover(RegionRemover regionRemover)	Initializes the optional value regionRemover to regionRemover.
final ImmutableDynamicProgrammingAll	ImmutableDynamicProgrammingAll.withRegionRemover(RegionRemover value)	Copy the current immutable object by setting a present value for the optional regionRemover attribute.

Method parameters in pl.poznan.put.structure.pseudoknots.dp with type arguments of type RegionRemover

Modifier and Type	Method	Description
final ImmutableDynamicProgrammingAll.Builder	ImmutableDynamicProgrammingAll.Builder.regionRemover(Optional<? extends RegionRemover> regionRemover)	Initializes the optional value regionRemover to regionRemover.
final ImmutableDynamicProgrammingAll	ImmutableDynamicProgrammingAll.withRegionRemover(Optional<? extends RegionRemover> optional)	Copy the current immutable object by setting an optional value for the regionRemover attribute.

Uses of RegionRemover in pl.poznan.put.structure.pseudoknots.elimination

Classes in pl.poznan.put.structure.pseudoknots.elimination that implement RegionRemover

Modifier and Type	Class	Description
class	AbstractRegionRemover	Java implementation of region removal algorithm as presented in: Smit, S. et al., 2008.
final class	ImmutableMaxConflicts	Immutable implementation of MaxConflicts.
final class	ImmutableMinGain	Immutable implementation of MinGain.
class	MaxConflicts	Java implementation of Elimination Conflicts algorithm as presented in: Smit, S. et al., 2008.
class	MinGain	Java implementation of Elimination Gain algorithm as presented in: Smit, S. et al., 2008.