Package pl.poznan.put.rna

Class Phosphate

java.lang.Object

pl.poznan.put.rna.Phosphate

All Implemented Interfaces:

ResidueComponent, NucleicAcidResidueComponent

Direct Known Subclasses:

ImmutablePhosphate

@Immutable(singleton=true)
public abstract class Phosphate
extends Object
implements NucleicAcidResidueComponent

A phosphate, part of RNA backbone.

Constructor Summary

Constructors

Constructor	Description
Phosphate()

Method Summary

Modifier and Type	Method	Description
final Set<AtomName>	additionalAtoms()
final NucleotideComponentType	nucleotideComponentType()
final Set<AtomName>	requiredAtoms()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Phosphate

public Phosphate()

Method Details

nucleotideComponentType

public final NucleotideComponentType nucleotideComponentType()

Specified by:

nucleotideComponentType in interface NucleicAcidResidueComponent

Returns:

The type of this nucleotide component.

requiredAtoms

public final Set<AtomName> requiredAtoms()

Specified by:

requiredAtoms in interface ResidueComponent

Returns:

A set of atoms that are expected to be present in this residue component.

additionalAtoms

public final Set<AtomName> additionalAtoms()

Specified by:

additionalAtoms in interface ResidueComponent

Returns:

A set of additional atoms that might be present in this residue component.