Uses of Class
pl.poznan.put.pdb.PdbNamedResidueIdentifier

Packages that use PdbNamedResidueIdentifier

Package	Description
pl.poznan.put.external.dssr
pl.poznan.put.pdb	Contains classes responsible for PDB/mmCIF data modelling and analysis.
pl.poznan.put.pdb.analysis	Contains classes which work on data from PDB or mmCIF files.
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
pl.poznan.put.structure.formats

Uses of PdbNamedResidueIdentifier in pl.poznan.put.external.dssr

Methods in pl.poznan.put.external.dssr that return PdbNamedResidueIdentifier

Modifier and Type	Method	Description
default PdbNamedResidueIdentifier	Nucleotide.toNamedResidueIdentifer()

Uses of PdbNamedResidueIdentifier in pl.poznan.put.pdb

Subclasses of PdbNamedResidueIdentifier in pl.poznan.put.pdb

Modifier and Type	Class	Description
final class	ImmutablePdbNamedResidueIdentifier	Immutable implementation of PdbNamedResidueIdentifier.

Methods in pl.poznan.put.pdb with parameters of type PdbNamedResidueIdentifier

Modifier and Type	Method	Description
static ImmutablePdbNamedResidueIdentifier	ImmutablePdbNamedResidueIdentifier.copyOf(PdbNamedResidueIdentifier instance)	Creates an immutable copy of a PdbNamedResidueIdentifier value.
final ImmutablePdbNamedResidueIdentifier.Builder	ImmutablePdbNamedResidueIdentifier.Builder.from(PdbNamedResidueIdentifier instance)	Fill a builder with attribute values from the provided pl.poznan.put.pdb.PdbNamedResidueIdentifier instance.

Uses of PdbNamedResidueIdentifier in pl.poznan.put.pdb.analysis

Methods in pl.poznan.put.pdb.analysis that return PdbNamedResidueIdentifier

Modifier and Type	Method	Description
default PdbNamedResidueIdentifier	PdbResidue.namedResidueIdentifier()

Methods in pl.poznan.put.pdb.analysis that return types with arguments of type PdbNamedResidueIdentifier

Modifier and Type	Method	Description
default List<PdbNamedResidueIdentifier>	ResidueCollection.namedResidueIdentifiers()

Uses of PdbNamedResidueIdentifier in pl.poznan.put.structure

Methods in pl.poznan.put.structure that return PdbNamedResidueIdentifier

Modifier and Type	Method	Description
abstract PdbNamedResidueIdentifier	BasePair.left()
PdbNamedResidueIdentifier	ImmutableBasePair.left()
abstract PdbNamedResidueIdentifier	BasePair.right()
PdbNamedResidueIdentifier	ImmutableBasePair.right()

Methods in pl.poznan.put.structure with parameters of type PdbNamedResidueIdentifier

Modifier and Type	Method	Description
final ImmutableBasePair.Builder	ImmutableBasePair.Builder.left(PdbNamedResidueIdentifier left)	Initializes the value for the left attribute.
static ImmutableBasePair	ImmutableBasePair.of(PdbNamedResidueIdentifier left, PdbNamedResidueIdentifier right)	Construct a new immutable BasePair instance.
final ImmutableBasePair.Builder	ImmutableBasePair.Builder.right(PdbNamedResidueIdentifier right)	Initializes the value for the right attribute.
final ImmutableBasePair	ImmutableBasePair.withLeft(PdbNamedResidueIdentifier value)	Copy the current immutable object by setting a value for the left attribute.
final ImmutableBasePair	ImmutableBasePair.withRight(PdbNamedResidueIdentifier value)	Copy the current immutable object by setting a value for the right attribute.

Uses of PdbNamedResidueIdentifier in pl.poznan.put.structure.formats

Method parameters in pl.poznan.put.structure.formats with type arguments of type PdbNamedResidueIdentifier

Modifier and Type	Method	Description
static BpSeq	BpSeq.fromBasePairs(List<PdbNamedResidueIdentifier> residues, Collection<? extends ClassifiedBasePair> basePairs)	Creates an instance of BPSEQ from a list of residue identifiers and a list of base pairs.