Uses of Interface
pl.poznan.put.structure.formats.Strand

Packages that use Strand

Package	Description
pl.poznan.put.structure.formats

Uses of Strand in pl.poznan.put.structure.formats

Classes in pl.poznan.put.structure.formats that implement Strand

Modifier and Type	Class	Description
class	DefaultStrand	A default implementation of a strand.
final class	ImmutableDefaultStrand	Immutable implementation of DefaultStrand.
final class	ImmutableStrandView	Immutable implementation of StrandView.
class	StrandView	A strand which is defined as a fragment of a dot-bracket structure.

Methods in pl.poznan.put.structure.formats that return Strand

Modifier and Type	Method	Description
default Strand	DotBracket.findStrand(DotBracketSymbol symbol)	Finds a strand which contains the given symbol.

Methods in pl.poznan.put.structure.formats that return types with arguments of type Strand

Modifier and Type	Method	Description
protected abstract List<Strand>	AbstractCombinedStrand.inputStrands()
protected abstract List<Strand>	CombinedStrand.inputStrands()
protected abstract List<Strand>	CombinedStrandFromPdb.inputStrands()
protected List<Strand>	ImmutableCombinedStrand.inputStrands()
protected List<Strand>	ImmutableCombinedStrandFromPdb.inputStrands()
List<Strand>	AbstractCombinedStrand.strands()
List<Strand>	CombinedStrand.strands()
List<Strand>	CombinedStrandFromPdb.strands()
List<Strand>	DefaultDotBracket.strands()
List<Strand>	DefaultDotBracketFromPdb.strands()
default List<Strand>	DotBracket.strands()
List<Strand>	ImmutableCombinedStrand.strands()
List<Strand>	ImmutableCombinedStrandFromPdb.strands()
List<Strand>	ImmutableDefaultDotBracket.strands()
List<Strand>	ImmutableDefaultDotBracketFromPdb.strands()

Methods in pl.poznan.put.structure.formats with parameters of type Strand

Modifier and Type	Method	Description
final ImmutableCombinedStrand.Builder	ImmutableCombinedStrand.Builder.addInputStrands(Strand element)	Adds one element to inputStrands list.
final ImmutableCombinedStrand.Builder	ImmutableCombinedStrand.Builder.addInputStrands(Strand... elements)	Adds elements to inputStrands list.
final ImmutableCombinedStrandFromPdb.Builder	ImmutableCombinedStrandFromPdb.Builder.addInputStrands(Strand element)	Adds one element to inputStrands list.
final ImmutableCombinedStrandFromPdb.Builder	ImmutableCombinedStrandFromPdb.Builder.addInputStrands(Strand... elements)	Adds elements to inputStrands list.
final ImmutableDefaultDotBracket.Builder	ImmutableDefaultDotBracket.Builder.addStrands(Strand element)	Adds one element to strands list.
final ImmutableDefaultDotBracket.Builder	ImmutableDefaultDotBracket.Builder.addStrands(Strand... elements)	Adds elements to strands list.
final ImmutableDefaultDotBracketFromPdb.Builder	ImmutableDefaultDotBracketFromPdb.Builder.addStrands(Strand element)	Adds one element to strands list.
final ImmutableDefaultDotBracketFromPdb.Builder	ImmutableDefaultDotBracketFromPdb.Builder.addStrands(Strand... elements)	Adds elements to strands list.
final ImmutableDefaultStrand.Builder	ImmutableDefaultStrand.Builder.from(Strand instance)	Fill a builder with attribute values from the provided pl.poznan.put.structure.formats.Strand instance.
final ImmutableStrandView.Builder	ImmutableStrandView.Builder.from(Strand instance)	Fill a builder with attribute values from the provided pl.poznan.put.structure.formats.Strand instance.
final ImmutableCombinedStrand	ImmutableCombinedStrand.withInputStrands(Strand... elements)	Copy the current immutable object with elements that replace the content of inputStrands.
final ImmutableCombinedStrandFromPdb	ImmutableCombinedStrandFromPdb.withInputStrands(Strand... elements)	Copy the current immutable object with elements that replace the content of inputStrands.
final ImmutableDefaultDotBracket	ImmutableDefaultDotBracket.withStrands(Strand... elements)	Copy the current immutable object with elements that replace the content of strands.
final ImmutableDefaultDotBracketFromPdb	ImmutableDefaultDotBracketFromPdb.withStrands(Strand... elements)	Copy the current immutable object with elements that replace the content of strands.

Method parameters in pl.poznan.put.structure.formats with type arguments of type Strand

Modifier and Type	Method	Description
final ImmutableCombinedStrand.Builder	ImmutableCombinedStrand.Builder.addAllInputStrands(Iterable<? extends Strand> elements)	Adds elements to inputStrands list.
final ImmutableCombinedStrandFromPdb.Builder	ImmutableCombinedStrandFromPdb.Builder.addAllInputStrands(Iterable<? extends Strand> elements)	Adds elements to inputStrands list.
final ImmutableDefaultDotBracket.Builder	ImmutableDefaultDotBracket.Builder.addAllStrands(Iterable<? extends Strand> elements)	Adds elements to strands list.
final ImmutableDefaultDotBracketFromPdb.Builder	ImmutableDefaultDotBracketFromPdb.Builder.addAllStrands(Iterable<? extends Strand> elements)	Adds elements to strands list.
final ImmutableCombinedStrand.Builder	ImmutableCombinedStrand.Builder.inputStrands(Iterable<? extends Strand> elements)	Sets or replaces all elements for inputStrands list.
final ImmutableCombinedStrandFromPdb.Builder	ImmutableCombinedStrandFromPdb.Builder.inputStrands(Iterable<? extends Strand> elements)	Sets or replaces all elements for inputStrands list.
static ImmutableCombinedStrand	ImmutableCombinedStrand.of(Iterable<? extends Strand> inputStrands)	Construct a new immutable CombinedStrand instance.
static ImmutableCombinedStrand	ImmutableCombinedStrand.of(List<Strand> inputStrands)	Construct a new immutable CombinedStrand instance.
static ImmutableCombinedStrandFromPdb	ImmutableCombinedStrandFromPdb.of(Iterable<? extends Strand> inputStrands, Map<? extends DotBracketSymbol,? extends PdbResidueIdentifier> inputSymbolToResidue)	Construct a new immutable CombinedStrandFromPdb instance.
static ImmutableCombinedStrandFromPdb	ImmutableCombinedStrandFromPdb.of(List<Strand> inputStrands, Map<DotBracketSymbol,PdbResidueIdentifier> inputSymbolToResidue)	Construct a new immutable CombinedStrandFromPdb instance.
final ImmutableDefaultDotBracket.Builder	ImmutableDefaultDotBracket.Builder.strands(Iterable<? extends Strand> elements)	Sets or replaces all elements for strands list.
final ImmutableDefaultDotBracketFromPdb.Builder	ImmutableDefaultDotBracketFromPdb.Builder.strands(Iterable<? extends Strand> elements)	Sets or replaces all elements for strands list.
final ImmutableCombinedStrand	ImmutableCombinedStrand.withInputStrands(Iterable<? extends Strand> elements)	Copy the current immutable object with elements that replace the content of inputStrands.
final ImmutableCombinedStrandFromPdb	ImmutableCombinedStrandFromPdb.withInputStrands(Iterable<? extends Strand> elements)	Copy the current immutable object with elements that replace the content of inputStrands.
final ImmutableDefaultDotBracket	ImmutableDefaultDotBracket.withStrands(Iterable<? extends Strand> elements)	Copy the current immutable object with elements that replace the content of strands.
final ImmutableDefaultDotBracketFromPdb	ImmutableDefaultDotBracketFromPdb.withStrands(Iterable<? extends Strand> elements)	Copy the current immutable object with elements that replace the content of strands.