Package pl.poznan.put.structure.formats

Class DefaultStrand

java.lang.Object

pl.poznan.put.structure.formats.DefaultStrand

All Implemented Interfaces:

DotBracket, Strand

Direct Known Subclasses:

ImmutableDefaultStrand

@Immutable
public abstract class DefaultStrand
extends Object
implements Strand

A default implementation of a strand.

Constructor Summary

Constructors

Constructor	Description
DefaultStrand()

Method Summary

Modifier and Type	Method	Description
abstract String	name()
abstract List<DotBracketSymbol>	symbols()
final String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface pl.poznan.put.structure.formats.DotBracket

combineStrands, containsMissing, findStrand, isIsolated, isolatedSymbols, length, missingInternal, missingTerminal, originalIndex, pairs, pseudoknotOrder, sequence, sequence, strands, structure, structure, toStringWithStrands

Methods inherited from interface pl.poznan.put.structure.formats.Strand

begin, description, end, isSingleStrand, missingBegin, missingEnd, sequenceRY

Constructor Details

DefaultStrand

public DefaultStrand()

Method Details

name

@Parameter(order=1)
public abstract String name()

Specified by:

name in interface Strand

Returns:

The name of the strand.

symbols

@Parameter(order=2)
public abstract List<DotBracketSymbol> symbols()

Specified by:

symbols in interface DotBracket

Returns:

The list of dot-bracket symbols.

toString

public final String toString()

Overrides:

toString in class Object