Maciej Antczak

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Professional duties

  • » Editorial board member
  • » Reviewer for journals
  • » Conference/Workshop Program Committee member
  • » Conference Organizing Committee member
  • » Chairman of conference sessions
  • » Reviewer for conferences
  • » List of promoted diploma theses
  • » Memberships
  • » Courses & Trainings

Editorial board member

  • » BMC Bioinformatics.
  • » Frontiers in RNA Research.
  • » Journal of Biotechnology, Computational Biology and Bionanotechnology.
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Reviewer for journals

  • » Nucleic Acids Research.
  • » Briefings in Bioinformatics.
  • » Bioinformatics.
  • » RNA Journal.
  • » Journal of Molecular Biology.
  • » PLOS Computational Biology.
  • » Frontiers in Molecular Biosciences.
  • » Computational and Structural Biotechnology.
  • » BMC Bioinformatics.
  • » PLOS ONE.
  • » Annals of Mathematics and Artificial Intelligence.
  • » Parallel Computing.
  • » Algorithms.
  • » Journal of Supercomputing.
  • » Current Computer-Aided Drug Design.
  • » GigaScience.
  • » International Journal of Computational Science and Engineering.
  • » International Journal of Intelligent Information and Database System.
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Conference/Workshop Program Committee member

  • » Member of Scientific Committee at the BioMeeting 2025, 23-25.05.2025, Poland.
  • » Area Chair at "AI4NA" workshop at the 13th International Conference on Learning Representations (ICLR'25), 24-28.04.2025, Singapore.
  • » "Data Science meets Optimization" workshop at the 28th International Joint Conference on Artificial Intelligence (IJCAI), 10-16.08.2019, Macao, China.
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Conference Organizing Committee member

  • » 3rd RNA-Puzzles meeting, Montreal, Canada, 2023.
  • » X Convention of the Polish Bioinformatics Society, Uniejow, Poland, 2017.
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Chairman of conference sessions

  • » PBS'22: Autumn Conference PTBI 2022, Warsaw, Poland, 2022.
  • » EURO'22: 32nd European Conference on Operational Research, Espoo, Finland, 2022.
  • » ICOLE'22: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, 2022.
  • » ICOLE'21: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, 2021.
  • » PBS'21: Autumn Conference PTBI 2021, Warsaw, Poland, 2021.
  • » EURO'21: 31st European Conference on Operational Research, Athens, Greece, 2021.
  • » ICOLE'19: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, 2019.
  • » EURO'18: 29th European Conference on Operational Research, Valencia, Spain, 2018.
  • » ICOLE'16: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, 2016.
  • » EURO'16: 28th European Conference on Operational Research, Poznan, Poland, 2016.
  • » ICOLE'10: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, 2010.
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Reviewer for conferences

  • » ICLS 2020: 15th International Congress on Logistics and SCM Systems, Poznan, Poland, 2020.
  • » RECOMB'15: 19th Annual International Conference on Research in Computational Molecular Biology, Warsaw, Poland, 2015.
  • » GECCO'11: Genetic and Evolutionary Computation Conference, Dublin, Ireland, 2011.
  • » EvoBIO'11: 9th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, Torino, Italy, 2011.
  • » GECCO'08: Genetic and Evolutionary Computation Conference, Atlanta, Georgia, USA, 2008.

List of promoted diploma theses

  • » 2024
    1. K. Plaza, Evaluation of methods for identifying base pairs in 3D RNA structures (Ewaluacja metod identyfikacji par zasad w strukturach 3D RNA), B.Sc. thesis, Faculty of Chemical Technology, Poznan University of Technology.
    2. B. Adamczyk, M. Bartkowiak, M. Bilinski, S. Stanisławski, Ocena jakości struktur 3D RNA z wykorzystaniem grafowych sieci neuronowych (Quality assessment of 3D RNA structures using graph neural networks), B.Sc. thesis, Faculty of Computing and Telecommunications, Poznan University of Technology. The best Bachelor's thesis in bioinformatics defended in 2024 awarded by the Polish Bioinformatics Society.
  • » 2023
    1. D. Makalowski, Efektywne porównywanie wielu struktur 3D cząsteczek biologicznych (Efficient comparison of multiple 3D structures of biological molecules), M.Sc. thesis, Faculty of Computing and Telecommunications, Poznan University of Technology.
    2. J. Wiedemann, Combinatorial analysis of RNA tertiary structures with the use of angular representations (Kombinatoryczna analiza struktur przestrzennych RNA z wykorzystaniem reprezentacji kątowych), Ph.D. thesis distinguished by the Discipline Council of Information and Communication Technology at Poznan University of Technology, Faculty of Computing and Telecommunications, Poznan University of Technology.
    3. J. Lamperska, M. Swiercz, F. Wozny, D. Ziebicki, RNAhugs: serwer obliczeniowy do dopasowywania modeli 3D RNA (RNAhugs: a computing webserver for aligning 3D RNA models), B.Sc. thesis, Faculty of Computing and Telecommunications, Poznan University of Technology.
  • » 2022
    1. D. Poda, R. Pylnyk, P. Ravliv, D. Hromniuk, RNArefiner: serwer udoskonalający struktury 3D RNA (RNArefiner: a webserver for 3D RNA structures refinement), B.Sc. thesis, Faculty of Computing and Telecommunications, Poznan University of Technology.
  • » 2021
    1. V. Hlushchenko, K. Luwanski, D. Martsich, RNAspider - System do wykrywania splątań w strukturach RNA (RNAspider - System for identification of entanglements in 3D RNA structures), B.Sc. thesis, Faculty of Computing and Telecommunications, Poznan University of Technology. The best Bachelor's thesis in bioinformatics defended in 2020/2021 awarded by the RNA Salon Poznan supported by RNA Society & Lexogen company.
  • » 2020
    1. J. Kaczor, RNAloops: baza struktur wieloramiennych pętli RNA (RNAloops:a database of RNA n-way junctions), M.Sc. thesis, Faculty of Computing and Telecommunications, Poznan University of Technology. The best Master's thesis in bioinformatics defended in 2020 awarded by the Polish Bioinformatics Society.
  • » 2018
    1. T. Gwozdzik, Opracowanie platformy internetowej pozwalającej na identyfikację oraz strukturalne porównywanie deskryptorów (Development of web platform allowing for identification and structural comparison of descriptors), M.Sc. thesis, Faculty of Computing, Poznan University of Technology.
  • » 2017
    1. M. Zablocki, Opracowanie i zastosowanie łatwo rozszerzalnej architektury aplikacji internetowych (Development and application of easily extendable architecture of internet applications), M.Sc. thesis, Faculty of Computing, Poznan University of Technology.
  • » 2016
    1. K. Panek, Opracowanie ram technologicznych wspierających wzorzec MVC umożliwiających projektowanie wielowarstwowych aplikacji internetowych opartych o architekturę OSGi i język programowania Kotlin (Development of MVC-driven framework allowing design of multi-layer Internet applications using OSGi architecture and Kotlin programming language), M.Sc. thesis, Faculty of Computing, Poznan University of Technology.
  • » 2015
    1. B. Borowski, Opracowanie i implementacja mechanizmu udostępniającego komunikację realizowaną w czasie rzeczywistym wielu urządzeń mobilnych/stacjonarnych z wykorzystaniem technologii internetowych (Development of a mechanism that supports a real-time communication of several mobile/stationary devices using web technologies), B.Sc. thesis, Faculty of Computing, Poznan University of Technology.
    2. M. Slusarczyk, A. Wdowinski, M. Zajaczkowski, Optymalizacja przetwarzania kompresora FastQComp oraz opracowanie modułu umożliwiającego selektywną dekompresję (Processing optimisation of compressor FastQComp and development of module allowing for selective decompression), B.Sc. thesis, Faculty of Computing, Poznan University of Technology.
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Memberships

  • » 2023: Member of Competition committee of XL National Competition for the best B.Sc. theses in computer science.
  • » 2023-present: Member of Open Bioinformatics Foundation.
  • » 2023-present: Member of the Peer Court of the Greater Poland Department of the Polish Information Processing Society.
  • » 2022: Member of Competition committee of XXXIX National Competition for the best M.Sc. theses in computer science.
  • » 2022-present: Member of PIPS: Polish Information Processing Society.
  • » 2021-present: Member of RNA Society.
  • » 2020-present: Chairman of PUT Organizing Committee of the Polish Informatics Olympics.
  • » 2019-present: Member of Discipline Council of Information and Communication Technology.
  • » 2015-2019: Deputy chairman of PUT Organizing Committee of the Polish Informatics Olympics.
  • » 2013-2014: Member of Organization Committee of Team Programming Championships of Greater Poland District.
  • » 2012-present: Member of EURO Working Group on Operations Research in Computational Biology, Bioinformatics and Medicine.
  • » 2011-present: Member of European Chapter on Combinatorial Optimization.
  • » 2010-present: Member of Computing Science Faculty Recruitment Committee for Bioinformatics course at Poznan University of Technology.
  • » 2009-present: Member of PBIS: Polish Bioinformatics Society.
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Courses & Trainings

  • » 09.2015: Soft skills and entrepreneurship course organized by Lund University Commissioned Education (funded by Ministry of Science and Higher Education from TransFormation.doc programme).
  • » 05.2015: Professional Scrum Master Training.
  • » 01.2015: Professional Scrum Product Owner Training.
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Nyheter

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