List of projects
I’m involved as Project Leader/participant in following scientific projects:
RNAssess - computational RNA quality analysis server
RNAlyzer: a framework for quality analysis of RNA model
SphereGrinder: a framework for quality analysis of protein models
Compuvac: Rational Design and Standardized Evaluation of Novel Genetic Vaccines
GeVaDSS: Genetic Vaccine Decision Support System
RNAComposer: a fully automated RNA structure modeling server
PDBee: webserver to derive secondary structures from pdb files of knotted and unknotted RNAs
National and international grants
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2013-2015 |
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Grant No 2012/05/B/ST6/03026, Informatyczne modele i metody w biologii komórkowej (Computational models and methods in cell biology) - main executor; |
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2013-2015 |
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Grant No 2012/06/A/ST6/00384, Automatyczne, wysokoprzepustowe modelowanie struktur przestrzennych RNA. Integrowanie informatyki z eksperymentem biochemicznym. (Automated, high-throughput modeling of RNA three-dimensional structures. Linking informatics and biochemical experiment.) – senior researcher, team leader; |
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2012-2013 |
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POWIEW – Program Obliczen Wielkich Wyzwań Nauki i Techniki, European Regional Development Fund within Innovative Economy Programme, POIG.02.03.00-00-018/08 POWIEW |
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2010-2012 |
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POIG.02.02-30-009/09, Rozwój Infrastruktury Europejskiego Centrum Bioinformatyki i Genomiki (A development of the European Center of Bioinformatics and Genomics infrastructure) – project manager; |
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2010-2012 |
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PAN-CNR Joint Polish-Italian Research Project, Advanced bioinformatic algorithms in molecular biology – senior researcher; |
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2008-2011 |
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Grant No NN519314635, Pierwszorzędowa i przestrzenna struktura kwasów nukleinowych i białek - analiza i algorytmy (Primary and tertiary structure of nucleic acids and proteins - analysis and algorithms) - executor; |
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2005-2009 |
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FP6 project BIOPTRAIN, Bioinformatics Optimisation Training – researcher; |
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2005-2009 |
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FP6 project COMPUVAC, Rational design and standarized evaluation of novel genetic vaccines – senior researcher, project manager; |
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2005-2008 |
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FP6 project METAFUNCTIONS, Environmental – and Meta-Genomics – a bioinformatic system to detect and assign functions to habitat specific gene patterns - senior researcher; |
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2004-2007 |
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Grant No 3T11F00227, Informatyczne aspekty analizy strukturalnej biomolekuł (Computational aspects of biomolecule structure analysis) - executor; |
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2006-2007 |
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POLONIUM, Joint Polish-French research project, researcher |
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2004-2005 |
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POLONIUM, Joint Polish-French research project, researcher |
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2002-2004 |
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MPI-PUT ESR Training Project – ESR, participant; |
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2001-2003 |
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Grant No 7T11F02621, Algorytmy wspomagające analizę liniowej i przestrzennej struktury kwasów nukleinowych i białek (Algorithms for an analysis of primary and tertiary structure of proteins and nucleic acids) - executor; |