Uses of Interface
pl.poznan.put.structure.formats.DotBracketFromPdb

Packages that use DotBracketFromPdb

Package	Description
pl.poznan.put.structure.formats

Uses of DotBracketFromPdb in pl.poznan.put.structure.formats

Classes in pl.poznan.put.structure.formats that implement DotBracketFromPdb

Modifier and Type	Class	Description
class	CombinedStrandFromPdb	A dot-bracket encoded structure made from combining one or more strands.
class	DefaultDotBracketFromPdb	A default implementation of a dot-bracket structure which is mapped to data from 3D coordinates.
final class	ImmutableCombinedStrandFromPdb	Immutable implementation of CombinedStrandFromPdb.
final class	ImmutableDefaultDotBracketFromPdb	Immutable implementation of DefaultDotBracketFromPdb.

Methods in pl.poznan.put.structure.formats that return types with arguments of type DotBracketFromPdb

Modifier and Type	Method	Description
final List<DotBracketFromPdb>	CombinedStrandFromPdb.combineStrands(List<ClassifiedBasePair> unused)
final List<DotBracketFromPdb>	DefaultDotBracketFromPdb.combineStrands(List<ClassifiedBasePair> nonCanonical)
List<DotBracketFromPdb>	DotBracketFromPdb.combineStrands(List<ClassifiedBasePair> nonCanonical)	Combines strands which are connected via canonical or non-canonical base pairs.

Methods in pl.poznan.put.structure.formats with parameters of type DotBracketFromPdb

Modifier and Type	Method	Description
final ImmutableDefaultDotBracketFromPdb.Builder	ImmutableDefaultDotBracketFromPdb.Builder.from(DotBracketFromPdb instance)	Fill a builder with attribute values from the provided pl.poznan.put.structure.formats.DotBracketFromPdb instance.