Uses of Class
pl.poznan.put.structure.formats.Ct

Packages that use Ct

Package	Description
pl.poznan.put.structure.formats

Uses of Ct in pl.poznan.put.structure.formats

Subclasses of Ct in pl.poznan.put.structure.formats

Modifier and Type	Class	Description
final class	ImmutableCt	Immutable implementation of Ct.

Methods in pl.poznan.put.structure.formats that return Ct

Modifier and Type	Method	Description
static Ct	Ct.fromBpSeq(BpSeq bpSeq)	Converts RNA secondary structure in BPSEQ format to CT format.
static Ct	Ct.fromBpSeqAndPdbModel(BpSeq bpSeq, PdbModel model)	Converts RNA secondary structure in BPSEQ format to CT format, taking into account information from 3D coordinates (residue numbering, chain sizes).
static Ct	Ct.fromDotBracket(DotBracket dotBracket)	Converts RNA secondary structure in dot-bracket format to CT format.
static Ct	Ct.fromString(String data)	Parses string into an instance of this class.
protected Ct	Ct.validate()
final Ct	Ct.withoutIsolatedPairs()	Finds all isolated base pairs and creates a copy of this instance without them.
final Ct	Ct.withoutPair(Ct.ExtendedEntry entry)	Creates a copy of this instance, but with the given pair removed.

Methods in pl.poznan.put.structure.formats with parameters of type Ct

Modifier and Type	Method	Description
static ImmutableCt	ImmutableCt.copyOf(Ct instance)	Creates an immutable copy of a Ct value.
static DotBracket	DefaultDotBracket.copyWithStrands(DotBracket input, Ct ct)	Creates a copy of existing instance and applies the information in CT format to divide strands accordingly.
final ImmutableCt.Builder	ImmutableCt.Builder.from(Ct instance)	Fill a builder with attribute values from the provided Ct instance.
static BpSeq	BpSeq.fromCt(Ct ct)	Converts RNA secondary structure in CT format to BPSEQ format.