{"id":96,"date":"2021-02-04T14:34:54","date_gmt":"2021-02-04T13:34:54","guid":{"rendered":"http:\/\/localhost\/mSzachniuk\/?page_id=96"},"modified":"2026-06-22T22:03:51","modified_gmt":"2026-06-22T20:03:51","slug":"conferences","status":"publish","type":"page","link":"https:\/\/www.cs.put.poznan.pl\/mszachniuk\/site\/conferences\/","title":{"rendered":"Conferences"},"content":{"rendered":"\n

Conferences<\/h1>\n\n\n\n

Conference and seminar presentations<\/a> | Conference organization<\/a> | Reviewing for conferences<\/a><\/p>\n\n\n\n

Conference and seminar presentations<\/a><\/h2>\n\n\n\n
    \n

    2027<\/h3>\n
  1. 23-25.06.2027, EURO-ALIO-ECCO Meeting on Combinatorial Optimisation, Edinburgh, UK, invited plenary talk<\/strong>;<\/div><\/li>\n\n

    2026<\/h3>\n
  2. 12.2026, CASP17 Conference: 17th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction;<\/div><\/li>\n
  3. 04-10.10.2026, ICOLE’26: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „tba”;<\/div><\/li>\n
  4. 16-18.09.2026, XIX Symposium of the Polish Bioinformatics Society, Poznan, Poland;<\/div><\/li>\n
  5. 05-17.07.2026, RNA Benasque: Computational Approaches to RNA Structure and Function, Benasque, Spain, talk „tba”;<\/div><\/li>\n
  6. 22.06.2026, Webinar of the School of Computational Science & Engineering, McMaster University, Hamilton, Canada, invited talk<\/strong> „AI-driven RNA modeling: from graphs to 3D conformations”;<\/div><\/li>\n
  7. 18-20.06.2026, BIT’26: Bioinformatics in Torun, Torun, Poland, invited talk<\/strong> „From scores to insight: visual analytics for RNA structure prediction”;<\/div><\/li>\n
  8. 27-29.05.2026, Nucleic Acid Structure Annotation & Prediction Hackathon, Prague, Czech Republic;<\/div><\/li>\n
  9. 20.05.2026, NAIR 2026: Nucleic Acids in Resonance, Poznan, Poland;<\/div><\/li>\n
  10. 14-16.05.2026, ECCO XXXIX: 39th Conference of the European Chapter on Combinatorial Optimization, Lisbon, Portugal, talk „Combinatorial modeling of RNA interactions”;<\/div><\/li>\n
  11. 15-17.04.2026, VIZBI: 16th international meeting on „Visualizing Biological Data”, Cambridge, UK, invited talk<\/strong> „RNA structure prediction: assessing the accuracy and topology of 3D models”;<\/div><\/li>\n
  12. 20.02.2026, AI Meets RNA Biology Mini-Symposium, EPFL AI Center, Bern, Switzerland, invited talk<\/strong> (online) „Graph Neural Networks for RNA structure prediction: descriptors, constraints & generalization”;<\/div><\/li>\n
  13. 08.01.2026, CASP RNA SIG: Nucleic Acid Structure Special-Interest Group seminar series, online, invited talk<\/strong> „Entanglements in RNA 3D structures: challenges and strategies”;<\/div><\/li>\n\n

    2025<\/h3>\n
  14. 11-12.12.2025, 9th BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „RNA-Puzzles round V: the decade-long game of guessing RNA shapes”;<\/div><\/li>\n
  15. 02-05.12.2025, EMBO Conference on Computational Structural Biology, Heidelberg, Germany, invited talk<\/strong> „RNA in a trap: detecting and fixing topological artifacts”;<\/div><\/li>\n
  16. 21-27.09.2025, ICOLE’25: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „The secret social life of nucleotides”;<\/div><\/li>\n
  17. 15-17.09.2025, XVIII Symposium of the Polish Bioinformatics Society, Bialystok, Poland, invited keynote talk<\/strong> „Off the beaten track: non-canonical choices and connections”;<\/div><\/li>\n
  18. 29.06-03.07.2025, GO’25: XIII International Colloquium on Graphs and Optimization, Leukerbad, Switzerland, talk „GO for RNA: graphs and optimization in structure reconstruction”;<\/div><\/li>\n
  19. 22-25.06.2025, XXXIV EURO: 34th European Conference on Operational Research, Leeds, UK, talk „Optimizing interface evaluation in molecular domain”;<\/div><\/li>\n
  20. 19-22.05.2025, CECAM Flagship Workshop „RNA modelling across scales”, Trieste, Italy, invited talk<\/strong> „Beyond Watson-Crick: modeling non-canonical RNA interactions”;<\/div><\/li>\n
  21. 8-10.05.2025, ECCO XXXVIII: 38th Conference of the European Chapter on Combinatorial Optimization, Marrakech, Morocco, talk „RNA 3D structure inference powered by graphs”;<\/div><\/li>\n
  22. 23-25.02.2025, ICORES 2025: 14th International Conference on Operations Research and Enterprise Systems, Porto, Portugal, invited talk<\/strong> „OR for the nanoworld: insights into RNA structure modeling”;<\/div><\/li>\n\n\n

    2024<\/h3>\n
  23. 05-06.12.2024, 8th BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „RNA structure prediction with denoising diffusion model and user-defined constraints”;<\/div><\/li>\n
  24. 02.12.2024, Seminar of the Institute of Bioorganic Chemistry PAS, Poland, talk „Topological challenges in RNA 3D structure prediction”;<\/div><\/li>\n
  25. 27-29.11.2024, BBCC2024: Bioinformatics and Computational Biology Conference, Naples, Italy, invited talk<\/strong> „Frontiers in computational\nprediction of RNA structure”;<\/div><\/li>\n
  26. 15-21.09.2024, ICOLE’24: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Detecting and resolving artifacts in RNA models”;<\/div><\/li>\n
  27. 11-13.09.2024, XVI Symposium of the Polish Bioinformatics Society, Warsaw, Poland;<\/div><\/li>\n
  28. 21.07-03.08.2024, RNA Benasque: Computational Approaches to RNA Structure and Function, Benasque, Spain, opening talk<\/strong> „Misfolded or not – that is the question\u2026”;<\/div><\/li>\n
  29. 30.06-03.07.2024, XXXIII EURO: 33rd European Conference on Operational Research, Copenhagen, Denmark;<\/div><\/li>\n
  30. 18.06.2024, Seminar of the University of Warsaw Biological and Chemical Research Centre, Warsaw, Poland, invited talk<\/strong> „Hallucinations in 3D RNA modeling”;<\/div><\/li>\n
  31. 23.05.2024, Reporting session of the Institute of Bioorganic Chemistry, PAS, Poznan, Poland, talk „Machine learning for RNA 2D structure prediction benchmarked on experimental data”;<\/div><\/li>\n\n

    2023<\/h3>\n
  32. 07-08.12.2023, 7th BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „In vivo versus in silico<\/em> – what do we discover in RNA structures?”;<\/div><\/li>\n
  33. 15-17.11.2023, 3D-BioInfo and 3D-SIG Conference in Structural Bioinformatics, Prague, Czech Republic, talk „Unraveling the RNA web: detecting and deciphering entanglements in 3D structures”;<\/div><\/li>\n
  34. 12-14.11.2023, PSDI’23: 31st Protein Structure Determination in Industry, Wellcome Genome Campus, Hinxton, Cambridge, UK, invited talk<\/strong> „Decoding the future: computational insights into RNA structure prediction”;<\/div><\/li>\n
  35. 24.10.2023, Plenary meeting of Division IV (Engineering Sciences) of the Polish Academy of Sciences, Warsaw, Poland, invited talk<\/strong> „Bioinformatics of RNA structures”;<\/div><\/li>\n
  36. 24-28.09.2023, The RiboClub Annual Meeting, Quebec, Canada, poster „Exploring entanglements in 3D RNA structures”;<\/div><\/li>\n
  37. 21-22.09.2023, 3rd RNA-Puzzles Meeting, Montreal, Canada, talk „RNAComposer and mindful modeling of the RNA structure”;<\/div><\/li>\n\n
  38. 10-14.07.2023, IFORS2023 STGO: the 23rd Conference of the International Federation of Operational Research Societies, Santiago, Chile, talk „Annotation of G4s in atom clouds”;\n<\/div><\/li>\n
  39. 11-13.05.2023, ECCO XXXVI: 36th Conference of the European Chapter on Combinatorial Optimization, Chania, Crete, Greece, talk „Knot hunters in the molecule world”;\n<\/div><\/li>\n
  40. 30.01-02.02.2023, Structure and topology of RNA in living systems, Trento, Italy, invited talk<\/strong> „Spiders, entanglements, and RNA structure prediction”;<\/div><\/li>\n\n\n\n

    2022<\/h3>\n
  41. 15.12.2022, Seminar of the Committee of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, online, invited talk<\/strong> „Metody obliczeniowe do modelowania i analizy struktur kwas\u00f3w nukleinowych”;<\/div><\/li>\n
  42. 10-13.12.2022, CASP15 Conference: 15th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction, Antalya, Turkey, invited talk<\/strong> „RNAComposer-based modeling of RNA 3D structures in CASP15”;<\/div><\/li>\n
  43. 01-02.12.2022, 6th BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „From RNA sequence to 3D structure using tricks of RNAComposer”;<\/div><\/li>\n
  44. 01-02.11.2022, 3D-Bioinfo Annual Conference, Hinxton, UK, talk „4-wheel driving with ONQUADRO”;<\/div><\/li>\n
  45. 26.10.2022, Seminar of the Structural Biology Club, Czech Society for Structural Biology, online, invited talk<\/strong> „Expert modeling of RNA 3D structure – examples from CASP-RNA”;<\/div><\/li>\n
  46. 10.10.2022, Seminar of the Institute of Bioorganic Chemistry PAS, Poland, talk „Snapshots from how we took up the challenge of CASP-RNA puzzles” (M. Szachniuk, J. Szarzynska, M. Antczak);<\/div><\/li>\n
  47. 18-23.09.2022, Dagstuhl Seminar 22381 on Rational Design of RiboNucleic Acids, International Conference and Research Center for Computer Science, Schloss Dagstuhl, Germany;<\/div><\/li>\n
  48. 14-16.09.2022, XIV Symposium of the Polish Bioinformatics Society, Warsaw, Poland;<\/div><\/li>\n
  49. 07-20.08.2022, RNA Benasque: Computational Approaches to RNA Structure and Function, Benasque, Spain, talk „Craig wants me to talk about G4s”;<\/div><\/li>\n
  50. 07-20.08.2022, RNA Benasque: Computational Approaches to RNA Structure and Function, Benasque, Spain, talk „Evaluation of predictions. The geometry of RNA 3D models”;<\/div><\/li>\n
  51. 03-06.07.2022, XXXII EURO: 32nd European Conference on Operational Research, Espoo, Finland, talk „Virxicon – a database for efficient search and analysis of viral sequences”;<\/div><\/li>\n
  52. 23-25.06.2022, BIT’22: Bioinformatics in Torun, Torun, Poland;<\/div><\/li>\n\n\n

    2021<\/h3>\n
  53. 14.12.2021, 3D-BioInfo 2021 Webinar, online, talk „Interlaces and lassos in 3D RNA models”;<\/div><\/li>\n
  54. 13-16.12.2021, 3rd Conference on Biomotors, Virus Assembly, and Nanobiotechnology Applications, online, invited talk<\/strong> „Bugs in RNA 3D structure prediction”;<\/div><\/li>\n
  55. 30.11-03.12.2021, 5th BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „Multiloops in RNA structures”;<\/div><\/li>\n
  56. 08.10.2021, Seminar of the Institute of Bioorganic Chemistry PAS, Poznan, Poland, talk „RNApolis: modele i metody do badania struktur RNA”;<\/div><\/li>\n
  57. 29.09-05.10.2021, ICOLE’21: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Entanglements in RNA 3D structures”;<\/div><\/li>\n
  58. 15-17.09.2021, XIII Symposium of the Polish Bioinformatics Society, online;<\/div><\/li>\n
  59. 11-14.07.2021, XXXI EURO: 31st European Conference on Operational Research, Athens, Greece, talk „An algorithm to detect entanglements in 3D RNA models”;<\/div><\/li>\n
  60. 19-20.05.2021, XXII Polish Conference on Biocybernetics and Biomedical Engineering, online;<\/div><\/li>\n
  61. 21.01.2021, Open lecture<\/strong> of Poznan University of Technology, Poland, talk „Applied bioinformatics: about folding, editing, and evaluation of RNA molecules in silico”;<\/div><\/li>\n\n\n

    2020<\/h3>\n
  62. 08.12.2020, Seminar of the Laboratory of Algorithmics, Adam Mickiewicz University, Poland, talk „Graphs, pseudoknots and the hierarchy of RNA folding”;<\/div><\/li>\n
  63. 02-04.12.2020, 4th BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „Computational methods for quadruplexes – an overview”;<\/div><\/li>\n
  64. 18.10.2020, Dagstuhl Seminar 20431 on Rational Design of RiboNucleic Acids, International Conference and Research Center for Computer Science, Schloss Dagstuhl, Germany;<\/del><\/div><\/li>\n
  65. 20-26.09.2020, ICOLE’20: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „On the way to improving the accuracy of RNA structure prediction”;<\/div><\/li>\n
  66. 16-18.09.2020, XIII Symposium of the Polish Bioinformatics Society, Warsaw, Poland;<\/del><\/div><\/li>\n
  67. 30-31.08.2020, 3D-Bioinfo Workshop „Geometry standards of nucleic acid structures”, Prague, Czech Republic;<\/del><\/div><\/li>\n
  68. 18-20.08.2020, 3rd RNA-Puzzles Meeting, Montreal, Canada;<\/del><\/div><\/li>\n
  69. 05-09.07.2020, GO’20: XI International Colloquium on Graphs and Optimization, Spa, Belgium, talk „RNA clashes and punctures from an algorithmic perspective” (M. Szachniuk, M. Antczak, M. Popenda);<\/del><\/div><\/li>\n
  70. 04-06.06.2020, ECCO 2020: 33rd Conference of the European Chapter on Combinatorial Optimization, St. Petersburg, Russia, talk „Detection of knots in RNA structures”;<\/del><\/div><\/li>\n
  71. 31.03.2020, Seminar of the Institute of Computing Science, Poznan University of Technology, Poland, talk „Everything you want to know about RNApolis”;<\/del><\/div><\/li>\n
  72. 11-12.02.2020, Polish Information Technology Olympics, Poznan, Poland, talk „What is bioinformatics”;<\/div><\/li>\n\n\n

    2019<\/h3>\n
  73. 02-03.12.2019, 3rd BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „Consensus-based evaluation and ranking of RNA models”;<\/div><\/li>\n
  74. 28-29.11.2019, AdvCompBio2019: Advances in Computational Biology, Barcelona, Spain, poster „ElTetrado captures topological features of nucleic acid quadruplexes”<\/a>;<\/div><\/li>\n
  75. 12-13.11.2019, Fascinating World of Bioorganic Chemistry, Poznan, Poland, invited talk<\/strong> „RNApolis opens the gates to G4s”;<\/div><\/li>\n
  76. 22-28.09.2019, ICOLE’19: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „New method to classify quadruplex motifs”;<\/div><\/li>\n
  77. 19-21.09.2019, XII Symposium of the Polish Bioinformatics Society, Cracow, Poland;<\/div><\/li>\n
  78. 06-09.09.2019, 7th International Meeting on Quadruplex Nucleic Acids, Changchun, China, co-authored poster „ONZ as novel quadruplex classification” (J. Miskiewicz*, M. Popenda, J. Sarzynska, T. Zok, M. Szachniuk);<\/div><\/li>\n
  79. 23-26.06.2019, XXX EURO: 30th European Conference on Operational Research, Dublin, Ireland;<\/div><\/li>\n
  80. 11-16.06.2019, RNA 2019: 24th Annual Meeting of the RNA Society, Cracow, Poland, talk „New classification of tetrads and quadruplexes in DNA and RNA structures”;<\/div><\/li>\n
  81. 30.05-01.06.2019, ECCO 2019: 32nd Conference of the European Chapter on Combinatorial Optimization, St. Julian’s, Malta, talk „Consensus-based approach to ranking similar objects”;<\/div><\/li>\n\n\n

    2018<\/h3>\n
  82. 10-13.12.2018, 2nd BIML Workshop „Bioinformatics meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine Learning, Mittweida, Germany, talk „Strengths and weaknesses of RNA folding simulation methods”;<\/div><\/li>\n
  83. 06-08.12.2018, 2nd RNA-Puzzles Meeting, Warsaw, Poland, talk „RNAComposer in modelling of RNA-Puzzles targets”;<\/div><\/li>\n
  84. 29-30.11.2018, ICMBPS: International Conference on Medical, Biological and Pharmaceutical Sciences, Yangon, Myanmar, talk „Virtual RNA biology: from sequence to high quality 3D structure model”;<\/div><\/li>\n
  85. 12-14.11.2018, International conference „Interdisciplinary Approaches to Complex Biological Systems” on the 30th anniversary of IBCh PAS, Poznan, Poland, talk „RNA structure modeling as bioinformatics challenge”;<\/div><\/li>\n
  86. 25-27.10.2018, Grand BIMSB Opening Symposium – 11th Berlin (Late) Summer Meeting „Computational and experimental biology meet”, Berlin, Germany, poster „RNAComposer – prototyping and tuning of RNA 3D structures”;<\/div><\/li>\n
  87. 22.10.2018, Seminar of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, talk „RNApolis: metody bioinformatyczne do badania struktur RNA”;<\/div><\/li>\n
  88. 23-29.09.2018, ICOLE’18: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Graph-based method for RNA structure remodeling”;<\/div><\/li>\n
  89. 05-07.09.2018, XI Symposium of the Polish Bioinformatics Society, Wroclaw, Poland;<\/div><\/li>\n
  90. 15-27.07.2018, RNA Benasque: Computational Approaches to RNA Structure and Function, Benasque, Spain, talk „RNA 2D\/3D structure in RNApolis. There and Back Again”;<\/div><\/li>\n
  91. 08-11.07.2018, XXIX EURO: 29th European Conference on Operational Research, Valencia, Spain, talk „Conflict graphs in pseudoknots modelling”;<\/div><\/li>\n
  92. 14-16.06.2018, ECCO 2018: 31st Conference of the European Chapter on Combinatorial Optimization, Fribourg, Switzerland, talk „RNA structure reparation with combinatorial algorithms”;<\/div><\/li>\n
  93. 17-18.05.2018, RNA&Computing 2018: 1st Seminar on RNA and Computing, Biedrusko, Poland, talk „New challenges in structural bioinformatics”;<\/div><\/li>\n
  94. 18-20.04.2018, RSBI 2018: 2nd Romanian Bioinformatics Seminars, Bucharest, Romania, invited talk<\/strong> „RNA structure modeling as bioinformatics challenge”;<\/div><\/li>\n
  95. 10.01.2018, 1st BIML Workshop „Bioinformatics Meets Machine Learning”, Saxony Institute for Computational Intelligence and Machine\nLearning, Mittweida, Germany, talk „RNApolis – bioinformatics solutions for RNA structural biology”;<\/div><\/li>\n\n\n

    2017<\/h3>\n
  96. 27-29.09.2017, X Symposium of the Polish Bioinformatics Society, Uniejow, Poland;<\/div><\/li>\n
  97. 18-20.09.2017, EMBL-EBI seminar, European Bioinformatics Institute, Cambridge, UK, invited talk<\/b> „Snapshots from RNApolis”;<\/div><\/li>\n
  98. 14-15.09.2017, Code4Life Scientific: Data Science Algorithms, Techniques and Architectures in Healthcare, Poznan, Poland, invited talk<\/strong> „RNA modeling – on the way to molecular targeted therapy”;<\/div><\/li>\n
  99. 21-22.05.2017, ORSIS 2017: Operations Research Society of Israel Conference, Tel Aviv, Israel, talk „RNA pseudoknots and graph coloring problem”;<\/div><\/li>\n
  100. 03-06.05.2017, ECCO 2017: 30th Conference of the European Chapter on Combinatorial Optimization, Koper, Slovenia, talk „Pseudoknot order determination as graph coloring problem”;<\/div><\/li>\n\n\n

    2016<\/h3>\n
  101. 13-16.11.2016, INFORMS Annual Meeting 2016, Nashville, USA, poster „Finding constrained paths in edge colored graphs”;<\/div><\/li>\n
  102. 15-16.10.2016, 1st RNA-Puzzles Meeting, Strasbourg, France, co-authored talk, „RNA 3D structure prediction using RNAComposer” (R.W. Adamiak, M. Antczak, T. Zok, M. Szachniuk);<\/div><\/li>\n
  103. 12-14.10.2016, Bilateral Retreat of IBCh PAS and Berlin Institute for Medical Systems Biology (BIMSB), Max Delbruck Centre for Molecular Medicine, Berlin, Germany, talk „RNApolis for RNA bioinformatics”;<\/div><\/li>\n
  104. 28-30.09.2016, IX Symposium of the Polish Bioinformatics Society, Bialystok, Poland;<\/div><\/li>\n
  105. 18-24.09.2016, ICOLE’16: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „RNAComposer and RNA 3D structure prediction with fragment substitutions”;<\/div><\/li>\n
  106. 10-14.07.2016, GO’16: X International Colloquium on Graphs and Optimization, Mount Rigi, Switzerland, laudation for prof. Jacek Blazewicz;<\/div><\/li>\n
  107. 03-06.07.2016, XXVIII EURO: 28th European Conference on Operational Research, Poznan, Poland, talk „RNAComposer and 3D structure prediction with fragment substitutions”;<\/div><\/li>\n
  108. 27-28.06.2016, Konferencja Uzytkownikow KDM 2016: W kierunku obliczen exaskalowych, Poznan, Poland, talk „Krotki przewodnik po RNApolis”;<\/div><\/li>\n
  109. 23.05.2016, Seminar of the Laboratory of Bioinformatics and Biophysics of Nanopores, Institute of Biomedical Engineering and Instrumentation, Wroclaw University of Technology, Wroclaw, Poland, invited talk<\/strong> „What a mess … and how to assess the RNA secondary structure”;<\/div><\/li>\n
  110. 16.05.2016, Seminar of Computational Centre and Department of Bioinformatics, University of Bialystok, Bialystok, Poland, invited talk<\/strong> „From RNApolis towards understanding plant miRNA”;<\/div><\/li>\n\n\n

    2015<\/h3>\n
  111. 22.12.2015, Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science, Poznan University of Technology, Poland, talk „New concepts for OCLP”;<\/div><\/li>\n
  112. 17-19.09.2015, VIII Symposium of the Polish Bioinformatics Society, Lublin, Poland;<\/div><\/li>\n
  113. 19-31.07.2015, RNA Benasque: Computational Analysis of RNA Structure and Function, Benasque, Spain, talk „RNApolis for RNA structure analysis. From 2D to 3D structure and back.”;<\/div><\/li>\n
  114. 12-15.07.2015, XXVII EURO: 27th European Conference on Operational Research, Glasgow, UK, talk „Disjoint pathways in NMR-based graphs”;<\/div><\/li>\n
  115. 28-30.05.2015, ECCO 2015: 28th Conference of the European Chapter on Combinatorial Optimization, Catania, Italy, talk „Applications of RNA trigonometric model”;<\/div><\/li>\n
  116. 10-13.05.2015, MultiPole-2: Multi-Pole Approach to Structural Science, Warsaw, Poland, invited talk<\/strong> „RNApdbee and assessing the RNA\nsecondary structure”;<\/div><\/li>\n
  117. 12-15.04.2015, RECOMB’15: The 19th Annual International Conference on Research in Computational Molecular Biology, Warsaw, Poland;<\/div><\/li>\n
  118. 25-30.01.2015, AIRO Winter 2015 Conference: Modelling the Externalities, Champoluc, Aosta, Italy, talk „On trigonometric representation of RNA 3D structure and its applications.”;<\/div><\/li>\n\n\n

    2014<\/h3>\n
  119. 27-31.10.2014, META’14: The 5th International Conference on Metaheuristics and Nature Inspired Computing, Marrakech, Morocco, talk „Integer Programming formulations for NMR-derived assignment problem”;<\/div><\/li>\n
  120. 06-10.10.2014, V Polish-Italian Workshop on Bioinformatics: Models and Algorithms for Bioinformatics, Rome, Italy, talk „Optimization problems in RNA structure modeling”;<\/div><\/li>\n
  121. 14-20.09.2014, ICOLE’14: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Pseudoknot annotation method for RNAs”;<\/div><\/li>\n
  122. 09-12.09.2014, BIO 2014: 1st Congress of the Polish Biochemistry, Cell Biology, Biophysics and Bioinformatics, Warsaw, Poland;<\/div><\/li>\n
  123. 06-10.07.2014, GO’14: IX International Colloquium on Graphs and Optimization, Sirmione, Italy, talk „Bio-inspired graph problems”;<\/div><\/li>\n
  124. 12-14.06.2014, BIT’14: Bioinformatics in Torun, Torun, Poland, invited talk<\/strong> „An algorithm to extract RNA secondary topology from the 3D structure” (M. Szachniuk and T. Zok);<\/div><\/li>\n\n\n

    2013<\/h3>\n
  125. 27-29.11.2013, CMLS-13: International Symposium on Computational Models for Life Sciences, Sydney, Australia, poster „Turning data into folds using RNAComposer”;<\/div><\/li>\n
  126. 24-26.11.2013, Seminar of Modelling, Optimisation and Simulation Group, CSIRO Mathematics, Informatics and Statistics, South Clayton, Australia, invited talk<\/b> „The orderly colored longest path problem and its applications in bioinformatics”;<\/div><\/li>\n
  127. 12-14.11.2013, Towards a New RNA World conference, IBCh PAS, Poznan, Poland, talk „Computing in the RNA world. From RNA FRABASE to RNAComposer”;<\/div><\/li>\n
  128. 01-06.10.2013, ICOLE’13: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „The orderly colored longest path problem and its applications”;<\/div><\/li>\n
  129. 27-29.09.2013, VI Symposium of the Polish Bioinformatics Society, Wroclaw, Poland;<\/div><\/li>\n
  130. 01-04.07.2013, XXVI EURO-INFORMS: 26th European Conference on Operational Research, Rome, Italy, talk „Optimal pathway reconstruction on NMR maps”;<\/div><\/li>\n
  131. 04.06.2013, Seminar of the Institute of Computing Science, Poznan University of Technology, Poland, talk „Combinatorial and algorithmic issues in RNA bioinformatics”;<\/div><\/li>\n
  132. 30.05-01.06.2013, ECCO 2013: 26th Conference of the European Chapter on Combinatorial Optimization, Paris, France, talk „Edge colored graphs and NMR maps”;<\/div><\/li>\n
  133. 08-10.05.2013, ISORAP’13: International Symposium on Operational Research and Applications, Marrakesh, Morocco, talk „IP solutions to the problem of routing along NMR peaks”;<\/div><\/li>\n\n\n

    2012<\/h3>\n
  134. 23.11.2012, Seminar of the Theoretical Molecular Biophysics Group, Institute of Physics, Nicholas Copernicus University, Torun, Poland, invited talk<\/b> „Co widac w szklanej kuli, czyli o przewidywaniu struktury RNA”;<\/div><\/li>\n
  135. 27-31.10.2012, META’12: The 4th International Conference on Metaheuristics and Nature Inspired Computing, Port El Kantaoui, Sousse, Tunisia, talk „A metaheuristic approach to disjoint NOE pathways reconstruction”;<\/div><\/li>\n
  136. 01-07.10.2012, ICOLE’12: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Multitouch interface to edit RNA 2D structures”;<\/div><\/li>\n
  137. 27-29.09.2012, BIT’12: Bioinformatics in Torun, Torun, Poland;<\/div><\/li>\n
  138. 13-15.09.2012, Mini EURO Conference on Computational Biology, Bioinformatics and Medicine, Nottingham, UK, talk „Solving RNA puzzle: strategies, milestones and constraints”;<\/div><\/li>\n
  139. 13-17.08.2012, GO’12: VIII International Colloquium on Graphs and Optimization, Leukerbad, Switzerland, talk „Transfer pathway reconstruction in NMR graphs”;<\/div><\/li>\n
  140. 15-16.05.2012, BIOCONNECT 2012: Business Meets Science to cooperate in current topics, Poznan, Poland, poster „RNAComposer – breaking the limits in prediction of large RNA 3D structures”;<\/div><\/li>\n
  141. 13.03.2012, Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science, Poznan University of Technology, Poland, co-authored talk „European Center for Bioinformatics and Genomics – aims and perspectives” (J. Blazewicz*, M. Szachniuk, M. Marcinkowska);<\/div><\/li>\n\n\n

    2011<\/h3>\n
  142. 24-26.11.2011, XVI Sympozjum Sekcji Kardiologii Eksperymentalnej Polskiego Towarzystwa Kardiologicznego, Poznan, Poland, invited plenary talk<\/b> „Bioinformatyka w poznawaniu struktury RNA”;<\/div><\/li>\n
  143. 16-19.11.2011, MultiPole-1: Multi-Pole Approach to Structural Biology, Warsaw, Poland, poster „RNA FRABASE – a database for RNA structures”;<\/div><\/li>\n
  144. 19-26.10.2011, III Polish-Italian Workshop on Bioinformatics: Models and algorithms for bioinformatics, Rome, Italy, talk „Summary of NMR data theoretical analysis”;<\/div><\/li>\n
  145. 30.09-02.10.2011, IV Symposium of the Polish Bioinformatics Society, Krakow, Poland;<\/div><\/li>\n
  146. 18-24.09.2011, ICOLE’11: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Snapshots from a theoretical study on the assignment problem”;<\/div><\/li>\n
  147. 15-16.09.2011, Polish-Luxembourg Workshop on Informatics, Poznan, Poland, talk „Bioinformatic solutions for RNA study”;<\/div><\/li>\n
  148. 25.07.2011, Seminar of Modelling, Optimisation and Simulation Group, CSIRO Mathematics, Informatics and Statistics, South Clayton, Australia, invited talk<\/b> „OR for 3D RNA structure modeling”;<\/div><\/li>\n
  149. 18-21.07.2011, Workshop on Mathematical aspects of biological systems, Wellington, New Zealand, talk „OR for RNA three-dimensional structure modeling”;<\/div><\/li>\n
  150. 10-15.07.2011, IFORS 2011: 19th Triennial Conference of the International Federation of Operational Research Societes, Melbourne, Australia, talk „RNA structure prediction from OR perspective”;<\/div><\/li>\n
  151. 30.05-01.06.2011, ECCO 2011: 24th Conference of the European Chapter on Combinatorial Optimization, Amsterdam, Netherlands, talk „Resonance assignment problem computational complexity”;<\/div><\/li>\n\n\n

    2010<\/h3>\n
  152. 09.11.2010, Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science, Poznan University of Technology, Poland, talk „RNAComposer & the art of composing RNA structures”;<\/div><\/li>\n\n
  153. 11-17.10.2010, II Polish-Italian Workshop on Bioinformatics: Models and algorithms for bioinformatics, Rome, Italy, talk „Advances in the analysis of 3D NMR spectra of biomolecules”;<\/div><\/li>\n\n
  154. 01-03.10.2010, III Symposium of the Polish Bioinformatics Society, Ustron, Poland;<\/div><\/li>\n\n
  155. 26.09-03.10.2010, ICOLE’10: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „RNAComposer: the art of composing RNA structures”; book of abstracts<\/a>;<\/div><\/li>\n\n
  156. 16-18.08.2010, EURASNET Interdisciplinary Focus Meeting: Frontiers in Structural Biology of RNAs and RNPs, Poznan, Poland, poster „RNA FRABASE 2.0 for the exploration of RNA structure parameter space”;<\/div><\/li>\n\n
  157. 12-15.08.2010, RECOMB’10: The 14th Annual International Conference on Research in Computational Molecular Biology, Lisbon, Portugal, poster „RNA FRABASE 2.0. An intelligent tool for the exploration of RNA structure parameter space”;<\/div><\/li>\n\n
  158. 11-14.07.2010, EURO XXIV: 24th European Congress on Operational Research, Lisbon, Portugal, talk „Manhattan Hamiltonian Path in NMR study”;<\/div><\/li>\n\n
  159. 05-08.07.2010, I Polish-Italian Workshop on Bioinformatics: Advanced bioinformatic algorithms in molecular biology, Poznan, Poland, talk „An analysis of RNA structures”;<\/div><\/li>\n\n
  160. 24-26.03.2010, The 2nd Conference of the Polish Mass Spectrometry Society, Poznan, Poland;<\/div><\/li>\n\n
  161. 18-19.02.2010,  Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „RNA FRABASE 2.0: an advanced web-accessible database with the capacity to\nsearch the 3D fragments within RNA structures”;<\/div><\/li>\n\n\n

    2009<\/h3>\n\n
  162. 2-4.10.2009, II Symposium of the Polish Bioinformatics Society, Bedlewo, Poland;<\/div><\/li>\n\n
  163. 05-08.07.2009, EURO XXIII: 23rd European Congress on Operational Research, Bonn, Germany, talk „RNA structure determination via NMR: automated processing of spectral data”;<\/div><\/li>\n\n
  164. 24-30.05.2009, ICOLE’09: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „Graphs in NMR analysis of RNAs”; book of abstracts<\/a>;<\/div><\/li>\n\n
  165. 30.03-02.04.2009, CIBCB’09: 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, Nashville, Tennessee, USA, talk „An assignment walk through 3D NMR spectrum”;<\/div><\/li>\n\n
  166. 10-11.02.2009,  Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „Automated sequential assignment in 3D NMR spectra of RNAs”;<\/div><\/li>\n\n\n

    2008<\/h3>\n
  167. 3-5.10.2008, I Symposium of the Polish Bioinformatics Society, Jadwisin, Poland;<\/div><\/li>\n\n
  168. 22-26.09.2008, ECCB’08: European Conference on Computational Biology, Cagliari, Sardinia-Italy, poster „Automated sequential assignment in 3D NMR spectra of RNAs”;<\/div><\/li>\n\n
  169. 15-17.09.2008, Mini EURO Conference on Computational Biology, Bioinformatics and Medicine, Rome, Italy, talk „Graph models in NMR structural analysis”;<\/div><\/li>\n\n
  170. 08-14.06.2008, ICOLE’08: Perspectives of Bioinformatics, Operations Research and Machine Learning, Lessach, Austria, talk „From document processing to an identification of marine microorganisms’\nhabitat specificity”; book of abstracts<\/a>;<\/div><\/li>\n\n
  171. 05-06.06.2008,  Annual Meeting of the Institute\nof Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „RNA FRABASE – design and implementation”;<\/div><\/li>\n\n
  172. 05-06.06.2008,  Annual Meeting of the Institute\nof Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „RNA FRABASE ver 1.0. An engine with a database to search for the three-dimensional fragments within RNA structures”;<\/div><\/li>\n\n
  173. 20-23.05.2008, EurOPT’08: Mini EURO Conference on Continuous Optimization and Knowledge-Based Technologies, Neringa, Lithuania, invited plenary talk<\/b> „OR in RNA structure analysis”;<\/div><\/li>\n\n
  174. 24-27.04.2008, Bioinformatics 2008, Warsaw, Poland, poster „An analysis of transfer pathway reconstruction problem in multidimensional NMR spectra”;<\/div><\/li>\n\n
  175. 30.03-02.04.2008, RECOMB’08: The 12th Annual International Conference on Research in Computational Molecular Biology, Singapore, poster „Constructing transfer pathways in multidimensional NMR spectra of RNAs”;<\/div><\/li>\n\n
  176. 30.03-02.04.2008, RECOMB’08: The 12th Annual International Conference on Research in Computational Molecular Biology, Singapore, poster „On the design of RNA fragments structural database”;<\/div><\/li>\n\n\n

    2007<\/h3>\n\n
  177. 17-18.12.2007, The First Conference on Synthetic Biology, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland;<\/div><\/li>\n\n
  178. 06.11.2007, Seminar of  the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science, Poznan University of Technology, Poland, talk „Project of RNA fragments database”;<\/div><\/li>\n\n
  179. 15.10.2007, Seminar of  the Institute of Mathematics, Polish Academy of Sciences, Warsaw, Poland, invited talk<\/b> „O rozwi\u0105zywaniu i wyszukiwaniu struktur przestrzennych fragment\u00f3w RNA”;<\/div><\/li>\n\n
  180. 05-06.10.2007, COMBI’07: 5th Workshop on Bioinformatics, Uniejow, Poland, talk „Analysis of resonance assignment in 3D NMR spectra”;<\/div><\/li>\n\n
  181. 08-11.07.2007, EURO XXII: 22nd European Congress on Operational Research, Prague, Czech Republic, talk „Structural information retrieval from NMR spectra of RNA molecules”; <\/div><\/li>\n\n
  182. 27.05-03.06.2007, ICOLE’07: Bioinformatics, Operations Research and Machine Learning: Recent Trends and Developments, Lessach, Austria, talk „Strategies of signal assignment in NMR spectra of RNAs with different structural motifs”; book of abstracts<\/a>;<\/div><\/li>\n\n
  183. 01-02.03.2007, Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „RNA FRABASE – baza danych dla wyszukiwania struktur przestrzennych zdefiniowanych fragment\u00f3w RNA”;<\/div><\/li>\n\n\n

    2006<\/h3>\n
  184. 06-07.10.2006,  4th Workshop on Bioinformatics, The Jadwisin Palace, Jadwisin, Poland;<\/div><\/li>\n\n
  185. 11-13.09.2006, IInd Symposium: Nuclear Magnetic Resonance in Chemistry, Biology and Medicine, Warszawa, Poland, poster „Algorithmic Approach to NOE Pathway Reconstruction in 2D-NOESY Spectra of RNA Molecules”;<\/div><\/li>\n\n
  186. 02-05.07.2006, EURO XXI: 21st European Conference on Operational Research, Reykjavik, Iceland, talk „Combinatorial Analysis of 2D-NOESY Spectra in Nuclear Magnetic Resonance Spectroscopy of RNA Molecules” within EDDA competition; <\/div><\/li>\n\n
  187. 17.05.2006, Szkola Spektroskopii NMR, Lodz University, Lodz, Poland;<\/div><\/li>\n\n
  188. 02-03.03.2006, Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, talk „Zastosowanie algorytmu tabu search do analizy widm NMR wybrzuszonych dupleksow RNA”;<\/div><\/li>\n\n

    2005<\/h3>\n\n
  189. 01-02.12.2005, XXXVIII Polish Seminar on Nuclear Magnetic Resonance and Its Applications, The Henryk Niewodniczanski Institute of Nuclear Physics, Polish Academy of Sciences, Cracow, Poland, poster „Zastosowanie algorytmu tabu search do konstruowania sciezek NOE na widmach 2D NOESY wybrzuszonych dupleksow RNA”; book of abstracts<\/a>;<\/div><\/li>\n\n
  190. 14-15.11.2005, CIBCB’05: 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, La Jolla, California, USA, talk „NMR analysis of RNA bulged structures: tabu search application to NOE signal assignment”;<\/div><\/li>\n\n
  191. 30.10-04.11.2005, Dagstuhl Seminar 05441 on Managing and Mining Genome Information: Frontiers in Bioinformatics, International Conference and Research Center for Computer Science, Schloss Dagstuhl, Germany, talk „On some graph problems arising in RNA 3D structure determination process with NMR\u201d; book of abstracts<\/a>;<\/div><\/li>\n\n
  192. 14-15.10.2005, 3rd Workshop on Bioinformatics, Mathematical Research and Conference Center, Bedlewo, Poland, talk „Zastosowanie algorytmu tabu search do analizy widm NMR wybrzuszonych dupleksow RNA”;<\/div><\/li>\n\n
  193. 31.05.2005, Public presentation and defence of Ph.D. thesis on „Combinatorial Analysis of 2D-NOESY Spectra in Nuclear Magnetic Resonance Spectroscopy of RNA Molecules”, Poznan University of Technology, Poland;<\/div><\/li>\n\n
  194. 10-11.03.2005, Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „An algorithm for an automatic NOE pathways analysis of 2D NMR spectra of RNA duplexes”;<\/div><\/li>\n\n
  195. 30.01-06.02.2005, ICOLE’05: International Workshop on Scheduling and Sequencing, Lessach, Austria, talk „Computational aspects of RNA tertiary structure determination with NMR techniques”;<\/div><\/li>\n\n

    2004<\/h3>\n\n
  196. 12-15.10.2004, Seminar of the Protein Structure Prediction Center in Lawrence Livermore National Laboratory, Livermore, California, USA, talk „RNA structural analysis with NMR – application of metaheuristics in the resonance assignment”;<\/div><\/li>\n\n
  197. 07-08.10.2004, CIBCB’04: 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, La Jolla, California, USA, talk „Evolutionary approach to NOE paths assignment in RNA structure elucidation”;<\/div><\/li>\n\n
  198. 08.06.2004, Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science, Poznan University of Technology, Poland, talk \u201cTabu search algorithm in the computation of NOE pathways in 2D-NOESY NMR spectra of RNA molecules”;<\/div><\/li>\n\n
  199. 21-22.05.2004, 2nd Workshop on Bioinformatics, Mathematical Research and Conference Center, Bedlewo, Poland, talk „Automatic analysis of RNA tertiary structure with NMR techniques and deuteration process”;<\/div><\/li>\n\n
  200. 01-02.04.2004, Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „An algorithm for an automatic NOE pathways analysis of 2D NMR spectra of RNA duplexes”;<\/div><\/li>\n\n
  201. 01-02.04.2004, Annual Meeting of the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, talk „Automatic assignment of NOE pathways in 2D-NOESY NMR spectra of RNA duplexes”;<\/div><\/li>\n\n\n

    2003<\/h3>\n
  202. 25.11.2003, Seminar of  the Laboratory of Bioinformatics, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, talk „Elucidation of the TAR RNA tertiary structure with NMR techniques”;<\/div><\/li>\n\n
  203. 06-07.10.2003, The First Workshop on Bioinformatics, Polish Academy of Sciences, Poznan, Poland, talk „Computation of RNA tertiary structure”;<\/div><\/li>\n\n
  204. 29.05.2003, Conference 'RNAi Panorama in Poland’,\nPolish Academy of Sciences, Poznan, Poland, talk „Algorithm and its application for\nautomatic analysis of the NOE path in the NMR spectra of RNA molecules”;<\/div><\/li>\n\n
  205. 27.05.2003, Seminar of the Institute of Computing\nScience, Poznan University of Technology, Poland, talk „RNA structural calculation”;<\/div><\/li>\n\n
  206. 10-13.04.2003, RECOMB’03: 7th Annual International\nConference on Research in Computational Molecular Biology, Berlin,\nGermany, poster „A combinatorial analysis of 2D NMR spectra of RNA\nduplexes”;<\/div><\/li>\n\n

    2002<\/h3>\n\n
  207. 24-25.06.2002,\nPolish\u2013Japanese Bilateral Seminar on Bioinformatics, Science Center,\nPolish Academy of Sciences, Poznan, Poland, talk „On the complexity of NOE pathway\nconstruction of RNA duplexes”;<\/div><\/li>\n\n
  208. 25-26.03.2002,  Annual Meeting of the Institute\nof Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland, poster „Combinatorial analysis of 2D-NOESY spectra in a search for RNA tertiary structure”;<\/div><\/li>\n\n
  209. 12.02.2002, Seminar of the NMR-based Structural Biology Department, Max-Planck Institute for\nBiophysical Chemistry, Goettingen, Germany, invited talk<\/b> „Combinatorial analysis of 2D-NOESY spectra in a search for RNA\ntertiary structure”;<\/div><\/li>\n\n

    2001<\/h3>\n\n
  210. 22-23.10.2001, MPG-Polish Symposium on\nBioinformatics, Max-Planck Society, Harnack Haus, Berlin-Dahlem, Germany, talk „Analysis of NMR spectra of\nRNA chains by combinatorial algorithms”;<\/div><\/li>\n\n
  211. 14-19.10.2001, ICOLE’01: International Workshop on Scheduling\nand Sequencing, Lessach, Austria, talk „Analysis of RNA\ntertiary structure problem complexity”;<\/div><\/li>\n\n
  212. 10.05.2001, Seminar of the Laboratory of\nAlgorithm Design and Data Structures, Institute of Computing\nScience, Poznan University of Technology, Poland, talk „Combinatorial\nanalysis of 3-dimensional RNA structure with the use of NMR experiment”;<\/div><\/li>\n\n

    1998<\/h3>\n\n
  213. 27-31.08.1998, The Fourth International Conference on Difference Equations and Applications ICDEA98, Poznan, Poland, technical staff of the conference;<\/div><\/li>\n<\/ol>\n\n\n\n

    Conference organization<\/a><\/h2>\n\n\n\n

    Conference Organizing Committee chair\/member<\/h4>\n