Conferences

  1. Exploring the Universe of Valid RNA Pseudoknot Orders Through Constraint Programming. Bioinformatics in Torun. June 2025. Talk
  2. Enumerating Valid RNA Pseudoknot Order Assignments: A Constraint Programming Approach. European Chapter on Combinatorial Optimization. May 2025. Talk
  3. RNAtango: A Webserver for RNA Structure Analysis in Torsion Angle Space. 3D-BioInfo. March 2025. Talk
  4. Reference-Free Ranking Method for RNA 3D Models. Symposium of the Polish Bioinformatics Society. September 2024. Poster
  5. Quadruplex Visualization and Analytics. Invited Talk at Molecure SA. June 2024. Talk
  6. Exact Algorithms for the Satellite Image Selection Problem. European Chapter on Combinatorial Optimization. June 2024. Talk
  7. Quadruplex Visualization and Analytics. BIML 2023 - International Workshop “Bioinformatic Meets Machine Learning”. December 2023. Talk
  8. Reference-Free Ranking Method for RNA 3D Models. 3D-BioInfo. November 2023. Poster
  9. WebTetrado: A Webserver to Explore Quadruplexes in Nucleic Acid 3D Structures. RiboClub Annual Meeting. September 2023. Poster
  10. Finding Knots and Tangles in RNA Models. RNA-Puzzles Meeting. September 2023. Talk
  11. RNApolis Tools for Analysis and Visualization of Quadruplexes. G4 Webinar. June 2023. Talk
  12. RNApdbee 3: An RNA Structure Multitool with Optimum Pseudoknot Order Assignment. European Chapter on Combinatorial Optimization. May 2023. Talk
  13. Visualization of Quadruplex Structures. Computational Analysis of RNA Structure and Function. August 2022. Talk
  14. Finding Entanglements of RNA Structural Elements. Computational Analysis of RNA Structure and Function. August 2022. Talk
  15. ONQUADRO: A Database of Experimentally Determined 3D Quadruplex Structures. G4thering: International Meeting on Quadruplex Nucleic Acids. June 2022. Poster
  16. RNAspider and RNA Structural Elements Entanglements. ICOLE: Perspectives of Bioinformatics, Operations Research and Machine Learning. May 2022. Talk
  17. Bioinformatics Methods Suitable for Analysis of Nucleic Acid Quadruplexes. Seminar of the Biophysics Department. January 2022. Talk
  18. BioCommons: A Robust Java Library for RNA Structural Bioinformatics. 3D-BioInfo. November 2021. Talk
  19. Graph-Based Approach for Quadruplex Analysis. European Conference on Operational Research. July 2021. Talk
  20. ONQUADRO: A Database of Experimentally Solved Quadruplexes. Seminar of the Structural Bioinformatics Laboratory. June 2021. Talk
  21. RNAloops, a Database of RNA Multiloops. RNA Society Meeting. May 2021. Poster
  22. A Pipeline to Find All Quadruplex Structures in the PDB. PDB50: A Special Symposium Celebrating the 50th Anniversary of the Protein Data Bank. May 2021. Poster
  23. The Influence of Structure Size on Similarity Metrics Values. Autumn Workshops PTBI. November 2020. Poster
  24. SARS-CoV-2 Structure Modeling Within RNA-Puzzles Initiative. Bioinformatics Fights SARS-CoV-2 and Other Viruses. June 2020. Talk
  25. Prediction and Evaluation of SARS-CoV-2 RNA 3D Models. RNA Society Meeting. May 2020. Poster
  26. Reference-Free Evaluation of RNA 3D Structure Models. Seminar of the Structural Bioinformatics Laboratory. February 2020. Talk
  27. Best Model Selection Among RNA 3D Structure Predictions. Symposium of the Polish Bioinformatics Society. September 2019. Poster
  28. Automatic Discovery of Quadruplexes in DNA/RNA 3D Structures. International Meeting on Quadruplex Nucleic Acids. September 2019. Talk
  29. Probabilistic Sampling of RNA 3D Conformational Spaces. European Conference on Operational Research. June 2019. Talk
  30. Reference-Free Evaluation of RNA 3D Models Quality. RNA Society Meeting. June 2019. Poster
  31. Consensus Analysis of Interaction Networks. RNA-Puzzles Meeting. December 2018. Talk
  32. Recognizing Native-Like Structure in a Set of RNA 3D Models. Berlin (Late) Summer Meeting. October 2018. Poster
  33. Analysis of RNA 3D Models to Discriminate Native-Like Folds. ICOLE: Perspectives of Bioinformatics, Operations Research and Machine Learning. September 2018. Talk
  34. RNApdbee 2.0. 3D → 2D Structure. Computational Analysis of RNA Structure and Function. July 2018. Talk
  35. RNApdbee 2.0: A Multifunctional Tool for RNA Structure Annotation. EMBO Workshop. RNA: Structure Meets Function. July 2018. Poster
  36. RNA Structure Annotation and Visualization with RNApdbee 2.0. Bioinformatics in Torun. June 2018. Poster
  37. RNA Pseudoknot Analysis: A Graph-Coloring Approach. European Chapter on Combinatorial Optimization. June 2018. Talk
  38. New Functions in RNApdbee 2.0. RNA & Computing. May 2018. Talk
  39. New Approaches to Determine RNA Pseudoknot Order. Symposium of the Polish Bioinformatics Society. September 2017. Talk
  40. RNAComposer Allows the User to Improve Accuracy of Predicted RNA 3D Structures. Bioinformatics in Torun. June 2017. Poster
  41. FutureGateway: A New Multi-Infrastructure Framework for Customisable Science Gateways. International Workshop on Science Gateways. June 2017. Talk
  42. New Approaches to Determine RNA Pseudoknot Order. RNA Society Meeting. May 2017. Poster
  43. Quality Assessment of RNA 3D Structures. RNA-Puzzles Meeting. October 2016. Talk
  44. Application of New Functionalities of RNAComposer in Order to Improve Prediction Accuracy. Symposium of the Polish Bioinformatics Society. September 2016. Talk
  45. RNAComposer: New Developments to Increase Accuracy of 3D RNA Structure Prediction. Congress BIO. September 2016. Poster
  46. A Consensus Approach to Evaluate RNA 3D Models Quality. RNA Society Meeting. June 2016. Poster
  47. A New Method to Evaluate Quality of RNA 3D Models. Bioinformatics in Torun. June 2016. Poster
  48. Algorytmiczne aspekty analizy podobieństwa struktur RNA. Seminar of the Institute of Computing Science. January 2016. Talk
  49. Constructing a Library of 3D RNA Conformations. Symposium of the Polish Bioinformatics Society. September 2015. Poster
  50. RNApolis for RNA Structure Analysis: RNA 3D Structure Analysis in Torsion Angle Space. Computational Analysis of RNA Structure and Function. July 2015. Talk
  51. Selected Aspects of RNA Structure Processing in Trigonometric Space. Bioinformatics in Torun. April 2015. Poster
  52. RNApdbee – Secondary Structure Retrieval from Knotted and Unknotted RNA Structures. RECOMB. International Conference on Research in Computational Molecular Biology. April 2015. Poster
  53. A Database of RNA Rotamers and Its Applications. Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science. October 2014. Talk
  54. Accurate Approach for Nucleotide Conformation Prediction of RNAs. European Conference on Computational Biology. September 2014. Poster
  55. An Algorithm to Extract RNA Secondary Topology from the 3D Structure. EURO WG Conference on Operational Research in Computational Biology, Bioinformatics and Medicine. June 2014. Talk
  56. An Algorithm to Extract RNA Secondary Topology from the 3D Structure. Bioinformatics in Torun. June 2014. Talk
  57. RNApdbee: From RNA Atom Coordinates to the Secondary Structure. Bioinformatics in Torun. June 2014. Poster
  58. An Algorithm to Extract RNA Secondary Topology from the 3D Structure. Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science. January 2014. Talk
  59. RNA Rotamer Library for Coarse-Grained Model Reconstruction. International Systems Biomedicine Symposium. October 2013. Poster
  60. A Search in RNA Conformational Space – Building a Library of Nucleotide Rotamers. ICOLE: Perspectives of Bioinformatics, Operations Research and Machine Learning. September 2013. Talk
  61. BioJava for Structural Bioinformatics. Bioinformatics in Torun. June 2013. Workshop
  62. Comparison of Multiple Structures in Torsion Angle Space. BIOTECHNO. March 2013. Talk
  63. Porównywanie struktur przestrzennych biomolekuł w przestrzeni trygonometrycznej. Seminar of the Bioinformatics Laboratory. December 2012. Talk
  64. Bioinformatics for the Monitoring of Molecule Conformational Changes. Bioinformatics in Torun. September 2012. Poster
  65. Ins and Outs of RNA Structure Comparison in Two Metric Spaces. Symposium of the Polish Bioinformatics Society. May 2012. Talk
  66. Computing Science Instrumentation in Tracing Molecule Structural Changes. Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science. May 2012. Talk
  67. Similar or Not? How to Compare Structures Using MCQ. New Frontiers in Structural Biology. January 2012. Talk
  68. Scientific Workfows in Kepler. EGI User Forum. April 2011. Workshop

  69. Comparison of RNA Structures in Torsional Angle Space. Seminar of the Laboratory of Algorithm Design and Data Structures, Institute of Computing Science. October 2010. Talk