Enumerating Valid RNA Pseudoknot Order Assignments: A Constraint
Programming Approach. European Chapter on Combinatorial
Optimization. May 2025. Talk
RNAtango: A Webserver for RNA Structure Analysis in Torsion Angle
Space. 3D-BioInfo. March 2025. Talk
Reference-Free Ranking Method for RNA 3D Models. Symposium of
the Polish Bioinformatics Society. September 2024. Poster
Quadruplex Visualization and Analytics. Invited Talk at Molecure
SA. June 2024. Talk
Exact Algorithms for the Satellite Image Selection Problem.
European Chapter on Combinatorial Optimization. June 2024.
Talk
Quadruplex Visualization and Analytics. BIML 2023 -
International Workshop “Bioinformatic Meets Machine
Learning”. December 2023. Talk
Reference-Free Ranking Method for RNA 3D Models.
3D-BioInfo. November 2023. Poster
WebTetrado: A Webserver to Explore Quadruplexes in Nucleic Acid 3D
Structures. RiboClub Annual Meeting. September 2023. Poster
Finding Knots and Tangles in RNA Models. RNA-Puzzles
Meeting. September 2023. Talk
RNApolis Tools for Analysis and Visualization of Quadruplexes.
G4 Webinar. June 2023. Talk
RNApdbee 3: An RNA Structure Multitool with Optimum Pseudoknot Order
Assignment. European Chapter on Combinatorial Optimization. May
2023. Talk
Visualization of Quadruplex Structures. Computational Analysis
of RNA Structure and Function. August 2022. Talk
Finding Entanglements of RNA Structural Elements. Computational
Analysis of RNA Structure and Function. August 2022. Talk
ONQUADRO: A Database of Experimentally Determined 3D Quadruplex
Structures. G4thering: International Meeting on Quadruplex Nucleic
Acids. June 2022. Poster
RNAspider and RNA Structural Elements Entanglements. ICOLE:
Perspectives of Bioinformatics, Operations Research and Machine
Learning. May 2022. Talk
Bioinformatics Methods Suitable for Analysis of Nucleic Acid
Quadruplexes. Seminar of the Biophysics Department. January
2022. Talk
BioCommons: A Robust Java Library for RNA Structural Bioinformatics.
3D-BioInfo. November 2021. Talk
Graph-Based Approach for Quadruplex Analysis. European
Conference on Operational Research. July 2021. Talk
ONQUADRO: A Database of Experimentally Solved Quadruplexes.
Seminar of the Structural Bioinformatics Laboratory. June 2021.
Talk
RNAloops, a Database of RNA Multiloops. RNA Society
Meeting. May 2021. Poster
A Pipeline to Find All Quadruplex Structures in the PDB. PDB50:
A Special Symposium Celebrating the 50th Anniversary of the Protein Data
Bank. May 2021. Poster
The Influence of Structure Size on Similarity Metrics Values.
Autumn Workshops PTBI. November 2020. Poster
SARS-CoV-2 Structure Modeling Within RNA-Puzzles Initiative.
Bioinformatics Fights SARS-CoV-2 and Other Viruses. June 2020.
Talk
Prediction and Evaluation of SARS-CoV-2 RNA 3D Models. RNA
Society Meeting. May 2020. Poster
Reference-Free Evaluation of RNA 3D Structure Models. Seminar of
the Structural Bioinformatics Laboratory. February 2020. Talk
Best Model Selection Among RNA 3D Structure Predictions.
Symposium of the Polish Bioinformatics Society. September 2019.
Poster
Automatic Discovery of Quadruplexes in DNA/RNA 3D Structures.
International Meeting on Quadruplex Nucleic Acids. September
2019. Talk
Probabilistic Sampling of RNA 3D Conformational Spaces. European
Conference on Operational Research. June 2019. Talk
Reference-Free Evaluation of RNA 3D Models Quality. RNA Society
Meeting. June 2019. Poster
Consensus Analysis of Interaction Networks. RNA-Puzzles
Meeting. December 2018. Talk
Recognizing Native-Like Structure in a Set of RNA 3D Models.
Berlin (Late) Summer Meeting. October 2018. Poster
Analysis of RNA 3D Models to Discriminate Native-Like Folds.
ICOLE: Perspectives of Bioinformatics, Operations Research and
Machine Learning. September 2018. Talk
RNApdbee 2.0. 3D → 2D Structure. Computational Analysis of RNA
Structure and Function. July 2018. Talk
RNApdbee 2.0: A Multifunctional Tool for RNA Structure Annotation.
EMBO Workshop. RNA: Structure Meets Function. July 2018. Poster
RNA Structure Annotation and Visualization with RNApdbee 2.0.
Bioinformatics in Torun. June 2018. Poster
RNA Pseudoknot Analysis: A Graph-Coloring Approach. European
Chapter on Combinatorial Optimization. June 2018. Talk
New Functions in RNApdbee 2.0. RNA & Computing. May
2018. Talk
New Approaches to Determine RNA Pseudoknot Order. Symposium of
the Polish Bioinformatics Society. September 2017. Talk
RNAComposer Allows the User to Improve Accuracy of Predicted RNA 3D
Structures. Bioinformatics in Torun. June 2017. Poster
FutureGateway: A New Multi-Infrastructure Framework for Customisable
Science Gateways. International Workshop on Science Gateways.
June 2017. Talk
New Approaches to Determine RNA Pseudoknot Order. RNA Society
Meeting. May 2017. Poster
Quality Assessment of RNA 3D Structures. RNA-Puzzles
Meeting. October 2016. Talk
Application of New Functionalities of RNAComposer in Order to
Improve Prediction Accuracy. Symposium of the Polish Bioinformatics
Society. September 2016. Talk
RNAComposer: New Developments to Increase Accuracy of 3D RNA
Structure Prediction. Congress BIO. September 2016. Poster
A Consensus Approach to Evaluate RNA 3D Models Quality. RNA
Society Meeting. June 2016. Poster
A New Method to Evaluate Quality of RNA 3D Models.
Bioinformatics in Torun. June 2016. Poster
Algorytmiczne aspekty analizy podobieństwa struktur RNA. Seminar
of the Institute of Computing Science. January 2016. Talk
Constructing a Library of 3D RNA Conformations. Symposium of the
Polish Bioinformatics Society. September 2015. Poster
RNApolis for RNA Structure Analysis: RNA 3D Structure Analysis in
Torsion Angle Space. Computational Analysis of RNA Structure and
Function. July 2015. Talk
Selected Aspects of RNA Structure Processing in Trigonometric Space.
Bioinformatics in Torun. April 2015. Poster
RNApdbee – Secondary Structure Retrieval from Knotted and Unknotted
RNA Structures. RECOMB. International Conference on Research in
Computational Molecular Biology. April 2015. Poster
A Database of RNA Rotamers and Its Applications. Seminar of the
Laboratory of Algorithm Design and Data Structures, Institute of
Computing Science. October 2014. Talk
Accurate Approach for Nucleotide Conformation Prediction of RNAs.
European Conference on Computational Biology. September 2014.
Poster
An Algorithm to Extract RNA Secondary Topology from the 3D
Structure. EURO WG Conference on Operational Research in
Computational Biology, Bioinformatics and Medicine. June 2014.
Talk
An Algorithm to Extract RNA Secondary Topology from the 3D
Structure. Bioinformatics in Torun. June 2014. Talk
RNApdbee: From RNA Atom Coordinates to the Secondary Structure.
Bioinformatics in Torun. June 2014. Poster
An Algorithm to Extract RNA Secondary Topology from the 3D
Structure. Seminar of the Laboratory of Algorithm Design and Data
Structures, Institute of Computing Science. January 2014. Talk
RNA Rotamer Library for Coarse-Grained Model Reconstruction.
International Systems Biomedicine Symposium. October 2013.
Poster
A Search in RNA Conformational Space – Building a Library of
Nucleotide Rotamers. ICOLE: Perspectives of Bioinformatics,
Operations Research and Machine Learning. September 2013. Talk
Comparison of Multiple Structures in Torsion Angle Space.
BIOTECHNO. March 2013. Talk
Porównywanie struktur przestrzennych biomolekuł w przestrzeni
trygonometrycznej. Seminar of the Bioinformatics Laboratory.
December 2012. Talk
Bioinformatics for the Monitoring of Molecule Conformational
Changes. Bioinformatics in Torun. September 2012. Poster
Ins and Outs of RNA Structure Comparison in Two Metric Spaces.
Symposium of the Polish Bioinformatics Society. May 2012. Talk
Computing Science Instrumentation in Tracing Molecule Structural
Changes. Seminar of the Laboratory of Algorithm Design and Data
Structures, Institute of Computing Science. May 2012. Talk
Similar or Not? How to Compare Structures Using MCQ. New
Frontiers in Structural Biology. January 2012. Talk
Scientific Workfows in Kepler. EGI User Forum. April 2011.
Workshop
Comparison of RNA Structures in Torsional Angle Space.
Seminar of the Laboratory of Algorithm Design and Data Structures,
Institute of Computing Science. October 2010. Talk