H-index=5 (Thomson Reuters)
H-index=8 (Google Scholar)
Total MNiSW points = 348

My publications - journals

2016

Graph algorithms for DNA sequencing - origins, current models and the future
J. Blazewicz, M. Kasprzak, M. Kierzynka, W. Frohmberg, A. Swiercz, P. Wojciechowski, P. Zurkowski
European Journal of Operational Research, 2016, doi:10.1016/j.ejor.2016.06.043
IF=2.68 (40 MNiSW points)

Energy Efficiency of Sequence Alignment Tools - Software and Hardware Perspectives
M. Kierzynka, L. Kosmann, M. vor dem Berge, S. Krupop, J. Hagemeyer, R. Griessl, M. Peykanu, A. Oleksiak
Future Generation Computer Systems , Vol 67, 2017, pp. 455-465, doi:10.1016/j.future.2016.05.006
IF=2.43 (40 MNiSW points)

Cloud and Automated Computations in Modern Personalized Medicine - AirPROM Project Perspective
Michal Kierzynka, Marcin Adamski, Andreas Fritz, Dmitriy Galka, Ian Jones, Dieter Maier, Oleksii Shtankevych and Andrew Wells
International Journal of Applied Mathematics and Informatics Vol. 10, 2016, pp. 52-60, ISSN: 2074-1278

G-MAPSEQ – a new method for mapping reads to a reference genome
P. Wojciechowski, W. Frohmberg, M. Kierzynka, P. Zurkowski, J. Blazewicz
Foundations of Computing and Decision Sciences, Volume 41, Issue 2, 2016, p.123-142, doi:10.1515/fcds-2016-0007
(15 MNiSW points)

2014

Real-time motion tracking using optical flow on multiple GPUs
S.A. Mahmoudi, M. Kierzynka, P. Manneback, K. Kurowski
Bull. Pol. Ac.: Tech., 62(1) 2014, p.139-150, doi:10.2478/bpasts-2014-0016
IF=0.98 (30 MNiSW points)

Benchmarking JPEG 2000 implementations on modern CPU and GPU architectures
Milosz Ciznicki, Michal Kierzynka, Piotr Kopta, Krzysztof Kurowski and Pawel Gepner
Journal of Computational Science, Volume 5, Issue 2, p.90-98, doi:10.1016/j.jocs.2013.04.002 (2014)
IF=1.231 (30 MNiSW points)

2013

G-DNA – a highly efficient multi-GPU/MPI tool for aligning nucleotide reads
Wojciech Frohmberg, Michal Kierzynka, Jacek Blazewicz, Piotr Gawron and Pawel Wojciechowski
Bull. Pol. Ac.: Tech., 61(4) 2013, p.989-992, doi:10.2478/bpasts-2013-0106
IF=0.98 (30 MNiSW points)

G-MSA — A GPU-based, fast and accurate algorithm for multiple sequence alignment
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzynka and Pawel Wojciechowski
J PARALLEL DISTR COM, 70(1) 2013, p.32-41, doi:10.1016/j.jpdc.2012.04.004
IF=1.078 (30 MNiSW points)

From physics model to results: An optimizing framework for cross-architecture code generation
Marek Blazewicz, Ian Hinder, David M. Koppelman, Steven R. Brandt, Milosz Ciznicki, Michal Kierzynka, Frank Loffler, Erik Schnetter and Jian Tao
Scientific Programming, doi:10.3233/SPR-130360 (2013)
IF=1.036 (20 MNiSW points)

DNA Sequence Assembly Involving an Acyclic Graph Model
J. Blazewicz, W. Frohmberg, P. Gawron, M. Kasprzak, M. Kierzynka, A. Swiercz and P. Wojciechowski
Foundations of Computing and Decision Sciences, 2013, Vol. 38, 25-34, doi:10.2478/v10209-011-0019-4
(15 MNiSW points)

2012

G-PAS 2.0 — an improved version of protein alignment tool with an efficient backtracking routine on multiple GPUs
Wojciech Frohmberg, Michal Kierzynka, Jacek Blazewicz and Pawel Wojciechowski
Bull. Pol. Ac.: Tech., 60(3) 2012, p.491-494, doi:10.2478/v10175-012-0062-1
IF=0.966 (30 MNiSW points)

Efficient Isosurface Extraction Using Marching Tetrahedra and Histogram Pyramids on Multiple GPUs
Miłosz Ciżnicki, Michał Kierzynka, Krzysztof Kurowski, Bogdan Ludwiczak, Krystyna Napierała and Jarosław Palczyński
Lecture Notes in Computer Science, Vol. 7204/2012, 343-352, doi:10.1007/978-3-642-31500-8_35
(13 MNiSW points)

Benchmarking Data and Compute Intensive Applications on Modern CPU and GPU Architectures
Milosz Ciżnick, Michal Kierzynka, Piotr Kopta, Krzysztof Kurowski and Pawel Gepner
Procedia Computer Science Vol. 9, 2012, pp. 1900-1909, doi:10.1016/j.procs.2012.04.208

2011

Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzynka, Erwin Pesch and Pawel Wojciechowski
BMC Bioinformatics, 2011, 12:181, doi:10.1186/1471-2105-12-181
IF=3.43 (35 MNiSW points)

CaKernel - A parallel application programming framework for heterogenous computing architectures
Marek Blazewicz, Steven R. Brandt, Michal Kierzynka, Krzysztof Kurowski, Bogdan Ludwiczak, Jian Tao, Jan Weglarz
Scientific Programming 19(4): 185-197 (2011)
IF=1.036 (20 MNiSW points)

Proceedings

Computational automation in modern personalized medicine - AirPROM project perspective
Michal Kierzynka, Marcin Adamski, Andreas Fritz, Dmitriy Galka, Ian Jones, Dieter Maier, Andrew Wells
Recent Advances in Computer Science, CSCC'15, pp. 281-285, ISBN:978-1-61804-320-7 (2015)

Modern hardware architectures accelerate porous media flow computations
Michal Kulczewski, Krzysztof Kurowski, Michal Kierzynka, Marek Dohnalik, Jan Kaczmarczyk, Ali Takbiri Borujeni
AIP Conference Proceedings 1453, pp. 161-166; doi:10.1063/1.4711169 (2012)

Real-Time GPU-Based Motion Detection and Tracking Using Full HD Videos
Sidi Ahmed Mahmoudi, Michal Kierzynka and Pierre Manneback
LNICST 124, INTETAIN 2013, pp. 12-21

Parallel architecture benchmarking: from embedded computing to HPC, a FiPS project perspective
Yves Lhuillier, Jean-Marc Philippe, Alexandre Guerre, Michał Kierzynka and Ariel Oleksiak
2014 International Conference on Embedded and Ubiquitous Computing, IEEE, pp. 154-161

FPGA-accelerated heterogeneous hyperscale server architecture for next-generation compute clusters
R. Griessl, M. Peykanu, J. Hagemeyer, M. Porrmann, L. Kosmann, P. Knocke, S. Krupop, M. vor dem Berge, M. Kierzynka, A. Oleksiak
First International Workshop on Heterogeneous High-performance Reconfigurable Computing (H2RC'15)