mfold server : 1995-2006, Michael Zuker, Rensselaer Polytechnic Institute
- RNA duplex -
s1 is the 2689500th nucleic acid sequence folded on the mfold server.
- poniedziałek 24 kwiecień 2006 16:57:22 EDT -

Folding s1 at 37° C. (3.0)
- Computed for dim53.neoplus.adsl.tpnet.pl Poland Flag -



flower - Output - flower

- The energy dot plot for s1. (Definition)
File formats: Text , PostScript, png jpg

- Computed Structures:   New RNAML Syntax,   (File Formats)
The computed foldings contain 751 base pairs out of 7308 (10%) in the energy dot plot.

- Extra files:   ct file sorted by revised dG;   h-num values;   p-num values;   log file for main computations.

Download all foldings: zipped file:
compressed tar file:
- View ss-count information: (Definition)  (ss-count file)  ss value = 6.79 ± 6.32
Averaging window
Magnification Base to magnify about Plot format

- View Individual Structures:

Click Here for New Structure Viewing Options

- Structure 1 : Initial dG = -227.2 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 2 : Initial dG = -224.8 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 3 : Initial dG = -224.6 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 4 : Initial dG = -223.5 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 5 : Initial dG = -221.3 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 6 : Initial dG = -220.6 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 7 : Initial dG = -220.5 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 8 : Initial dG = -219.7 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 9 : Initial dG = -217.9 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 10 : Initial dG = -217.3 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 11 : Initial dG = -217.0 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 12 : Initial dG = -216.3 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 13 : Initial dG = -216.2 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 14 : Initial dG = -216.1 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 15 : Initial dG = -216.1 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 16 : Initial dG = -216.1 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Structure 17 : Initial dG = -216.0 kcal/mole, (Thermodynamic Details).
Different file formats: PostScript, png, jpg, new, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, GCG, XRNA ss.

- Dot plot folding comparisons for s1:
- Image format:
- Compare selected foldings:     1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   17   All
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These computations were performed on cn-27.bioinfo.z in 1 min. and 14.64 sec. and can be accessed at http://www.bioinfo.rpi.edu/applications/mfold/old/mfold/16/06Apr24-16-57-16/
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