Jacek Błażewicz

	Doctorate Honoris Causa at the University of Siegen
	Dr. HC Diploma Laudatio Prof. Erwin Pesch Laudatio.avi Guest Lecture Prof. Rita Süssmuth, f. President of Bundestag
	Article in Westfälische Rundschau
	Article in Siegener Zeitung
	Article in Głos Wielkopolski
	Appreciation letter of Prof. Edmund Burke, Dean of Science Faculty at the University of Nottingham
	Patent for isothermic DNA sequencing
	Patent Description of the patent
	Patent for NOE path reconstruction
	Most important papers on the combinatorial models of sequencing and analysis of nucleic acids and proteins:

• J.Błażewicz, A.Hertz, D.Kobler, D.de Werra,
  „On some properties of DNA graphs”
  Discrete Applied Mathematics 98, 1999,pp.1-19. pdf
• J.Błażewicz, P.Formanowicz, M.Kasprzak, W.T.Markiewicz, J.Węglarz,
  „DNA sequencing with positive and negative errors”,
  Journal of Computational Biology 6, 1999, pp.113-123. ps
• J. Błażewicz, D. Kobler
  "Review of properties of different precedence graphs for scheduling problems"
  European Journal of Operational Research 142, 2002, pp.435-443. pdf
• R.W. Adamiak, J. Błażewicz, P. Formanowicz, Z. Gdaniec, M. Kasprzak, M. Popenda, M. Szachniuk
  "An algorithm for an automatic NOE pathways analysis of 2D NMR spectra of RNA duplexes"
  Journal of Computational Biology 11, 2004, pp. 167-183. pdf
• J. Błażewicz, P. Formanowicz, M. Kasprzak
  "Selected combinatiorial problems of computational biology"
  European Journal of Operational Research 161, 2005, pp.585-597. pdf
• J. Błażewicz, M. Szachniuk, A. Wójtowicz
  "RNA tertiary structure determination: NOE pathways construction by tabu search"
  Bioinformatics 21, 2005, pp.2356-2361. pdf
• J. Błażewicz, F. Glover, M. Kasprzak
  "Evolutionary approaches to DNA sequencing with errors"
  Annals of Operations Research 138, 2005, pp.67-78. pdf
• J. Błażewicz, P.L. Hammer, P. Łukasiak
  "Predicting secondary structures of proteins"
  IEEE Engineering in Medicine and Biology 24, 2005, pp.88-94. pdf
• J. Błażewicz, P.Łukasiak, M.Miłostan,
  "Some operations research methods for analyzing protein sequences and structures"
  4OR: A Quarterly Journal of Operations Research 4, 2006, pp.91 - 123. pdf
• J. Błażewicz, C. Oğuz, A. Świercz, J. Węglarz
  "DNA sequencing by hybridization via genetic search"
  Operations Research 54, 2006, pp.1185-1192. pdf
• J. Błażewicz, M. Kasprzak
  "Computational complexity of isothermic DNA sequencing by hybridization"
  Discrete Applied Mathematics 154, 2006, pp.718-729. pdf
• J. Błażewicz, F. Glover, M. Kasprzak, W.T. Markiewicz, C. Oğuz, D. Rebholz-Schuhmann, A. Świercz
  "Dealing with repetitions in sequencing by hybridization"
  Computational Biology and Chemistry 30, 2006, pp 313-320. pdf
• D. Barthel, J.D. Hirst, J. Blazewicz, E.K. Burke, N. Krasnogor
  "ProCKSI: A Decision Support System for Protein (Structure) Comparison, Knowledge, Similarity and Information"
  BMC Bioinformatics 8:416, 2007. pdf
• D. Formanowicz, A. Sackmann, P. Formanowicz, J. Błażewicz
  "Petri net based model of the body iron homeostasis"
  Journal of Biomedical Informatics 40, 2007, pp.476-485. pdf
• J. Błażewicz, P. Formanowicz, M. Kasprzak, P. Schuurman, G.J. Woeginger
  "A polynomial time equivalence between DNA sequencing and the exact perfect matching problem"
  Discrete Optimization 4, 2007, pp.154-162. pdf
• J. Błażewicz, E. Burke, M. Kasprzak, A. Kovalev, M.Y. Kovalyov
  "Simplified partial digest problem: enumerative and dynamic programming algorithms"
  IEEE/ACM Trans. on Computational Biology and Bioinformatics 4, 2007, pp. 668-680. pdf
• N. Krasnogor, A.A. Shah, D. Barthel, P. Lukasiak, J. Blazewicz
  "Web and Grid technologies in bioinformatics, computational and systems biology: a review"
  Current Bioinformatics 3, 2008, pp. 10-31. pdf
• J. Błażewicz, M. Kasprzak, B. Leroy-Beaulieu, D. de Werra
  "Finding Hamiltonian circuits in quasi-adjoint graphs"
  Discrete Applied Mathematics 156, 2008, pp.2573-2580. pdf
• J. Błażewicz, D. Formanowicz, P. Formanowicz, A. Sackmann, M. Sajkowski
  "Modeling the process of human body iron homeostasis using a variant of timed Petri nets"
  Discrete Applied Mathematics 157, 2009, pp.2221-2231. pdf
• J. Błażewicz, M. Bryja, M. Figlerowicz, P. Gawron, M. Kasprzak, E. Kirton, D. Platt, J. Przybytek, A. Świercz, L. Szajkowski
  "Whole genome assembly from 454 sequencing output via modified DNA graph concept"
  Computational Biology and Chemistry 33, 2009, pp. 224-230. pdf
• J. Błażewicz, D. Formanowicz, P. Formanowicz
  "Zastosowanie sieci Petriego do modelowania procesów biologicznych"
  Kosmos 58 (1-2), 2009, pp. 79-88. pdf
• J. Błażewicz, P. Łukasiak
  "System wspomagania wytwarzania i analizy szczepionek genetycznych"
  Kosmos 58 (1-2), 2009, pp. 113-126. pdf
• J. Błażewicz, E. Burke, M. Kasprzak, A. Kovalev, M.Y. Kovalyov
  "On the approximability of the Simplified Partial Digest problem"
  Discrete Applied Mathematics 157, 2009, pp. 3586-3592. pdf
• J.Błażewicz, M.Borowski, P.Formanowicz, T.Głowacki
  "Genetic and tabu search algorithms for peptide assembly problems"
  RAIRO - Operations Research, 2010, to appear. pdf
• J.Błażewicz, J.Musiał, M.Kovalyov, A.Urbański, A.Wojciechowski
  "Internet Shopping Optimization problem"
  International Journal of Applied Mathematics and Computer Science, 2010, to appear. pdf