Publications

Published articles:

  • Master Journal List
    1. A method for constructing artificial DNA libraries based on generalized de Bruijn sequences
      A. Kozak, T. Głowacki, P. Formanowicz
      Discrete Applied Mathematics (259), 30 April 2019, pp 127-144 [25p].
    2. Structural analysis of a Petri net model of oxidative stress in atherosclerosis
      A. Kozak, D. Formanowicz, P. Formanowicz
      IET Systems Biology, 2018 [20p].
    3. Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems
      Marcin Radom, Agnieszka Rybarczyk, Bartłomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz
      Bioinformatics, https://doi.org/10.1093/bioinformatics/btx492, 2017 [45p].
    4. Dedicated Heuristic for Peptide Assembly Problem
      T. Glowacki, A. Kozak, P. Formanowicz
      Yi-Ping Phoebe Chen (Ed.), Current Bioinformatics 12, 2017 [15p].
    5. Hemojuvelin–hepcidin axis modeled and analyzed using Petri nets
      Dorota Formanowicz, Adam Kozak, Tomasz Głowacki, Marcin Radom, Piotr Formanowicz
      Journal of Biomedical Informatics 46 (6) 2013, p.1030–1043 [35 p]
    6. On a generalized model of labeled graphs
      Adam Kozak, Tomasz Głowacki, Piotr Formanowicz
      Discrete Applied Mathematics 161, 2013, p. 1818 - 1827 [25 p]
    7. Some aspects of the anemia of chronic disorders modeled and analyzed by petri net based approach
      D. Formanowicz, A. Sackmann, A. Kozak, J. Błażewicz, P. Formanowicz
      Bioprocess and Biosystems Engineering 34, 2011, p. 581–595 [30 p]
  • Other
    1. Wykorzystanie sieci Petriego do analizy stresu oksydacyjnego towarzyszącego miażdżycy
      D. Formanowicz, A. Kozak, P. Formanowicz
      W: Andrzej Świerniak, Jolanta Krystek (red.), Automatyzacja procesów dyskretnych. Teoria i zastosowania. Tom II, 83-95. Wydawnictwo Pracowni Komputerowej Jacka Skalmierskiego, Gliwice 2014.
    2. A Petri net based model of oxidative stress in atherosclerosis
      D. Formanowicz, A. Kozak, P. Formanowicz
      Foundations of Computing and Decision Sciences, 2012, vol. 37 no. 2 [7 p]
    3. Selected aspects of endothelial dysfunction and their influence on atherosclerosis process modeled and analyzed by Petri net based approach
      D. Formanowicz, A. Kozak, P. Formanowicz
      Biotechnologia, 2011, 92(4), p. 359 [5 p]
    4. Applications of labeled graphs in methods for DNA and peptide chains reconstruction
      A. Kozak, T. Głowacki, P. Formanowicz
      Automatyzacja Procesów Dyskretnych, tom II. Gliwice 2010, p. 105-112
    5. On algorithms for long peptide assembly
      T. Głowacki, A. Kozak, M. Borowski, P. Formanowicz
      Automatyzacja Procesów Dyskretnych, tom II. Gliwice 2010, p. 45-52
    6. Assembling long peptides using GRASP metaheuristic
      T. Głowacki, A. Kozak, P. Formanowicz
      Zeszyty Naukowe Politechniki Śląskiej z. 150, 2008, p. 203-209
    7. Base-labeled graphs as unified representation of adjoints
      A. Kozak, T. Głowacki, P. Formanowicz
      Zeszyty Naukowe Politechniki Śląskiej z. 150, 2008, p. 209-215
    8. Constructing Oligonucleotide Libraries Based on Graph Theory Models
      A. Kozak, T. Głowacki, P. Formanowicz
      Ifl Technical report Series 06, 2008, p. 39-42
    9. Peptides assembling and sequencing methods
      J. Błażewicz, M. Borowski, P. Formanowicz, T. Głowacki, A. Kozak
      Ifl Technical report Series 3, 2007, p. 15-17

 

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